Gene annotation
Transcriptome id Sobic.009G083400.1
Synonym Sb09g007340
Functional annotation RNA recognition motif family protein, expressed
UniProt A0A1B6P7P7
Pfam PF14259 PF00076
Panther DB PTHR24012 PTHR24012:SF374
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G44710 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g45930.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a017902
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G251900 - -
2 Sobic.010G224300 peptidyl-prolyl cis-trans isomerase-like 4, putative, expressed K12735: peptidyl-prolyl cis-trans isomerase-like 4
3 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
4 Sobic.007G004000 YL1 nuclear protein C-terminal domain containing protein, expressed K11664: VPS72, TCFL1, vacuolar protein sorting-associated protein 72
5 Sobic.004G102000 expressed protein K13172: SRRM2, serine/arginine repetitive matrix protein 2
6 Sobic.004G216500 hypothetical protein -
7 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
8 Sobic.002G278000 endonuclease/exonuclease/phosphatase family protein, putative, expressed K10772: AP endonuclease 2
9 Sobic.001G347300 splicing factor, arginine/serine-rich 16, putative, expressed K13168: splicing factor, arginine/serine-rich 16
10 Sobic.001G107900 fip1 motif family protein, expressed -
11 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
12 Sobic.001G542700 expressed protein -
13 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
14 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
15 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.006G039800 ATP-binding region, ATPase-like domain containing protein, expressed -
17 Sobic.003G108700 RNA recognition motif, putative, expressed -
18 Sobic.001G174900 DEK C terminal domain containing protein, expressed K17046: protein DEK
19 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
20 Sobic.007G227000 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II


Gene co-expression network
sample Sobic009G083400 Sobic009G083400 Sobic006G251900 Sobic006G251900 Sobic009G083400--Sobic006G251900 Sobic010G224300 Sobic010G224300 Sobic009G083400--Sobic010G224300 Sobic002G127100 Sobic002G127100 Sobic009G083400--Sobic002G127100 Sobic007G004000 Sobic007G004000 Sobic009G083400--Sobic007G004000 Sobic004G102000 Sobic004G102000 Sobic009G083400--Sobic004G102000 Sobic004G216500 Sobic004G216500 Sobic009G083400--Sobic004G216500 Sobic006G161000 Sobic006G161000 Sobic009G083400--Sobic006G161000 Sobic002G278000 Sobic002G278000 Sobic009G083400--Sobic002G278000 Sobic001G347300 Sobic001G347300 Sobic009G083400--Sobic001G347300 Sobic006G251900--Sobic001G347300 Sobic007G126600 Sobic007G126600 Sobic006G251900--Sobic007G126600 Sobic006G251900--Sobic009G083400 Sobic003G108700 Sobic003G108700 Sobic006G251900--Sobic003G108700 Sobic001G511500 Sobic001G511500 Sobic006G251900--Sobic001G511500 Sobic006G251900--Sobic004G216500 Sobic006G251900--Sobic002G127100 Sobic008G192600 Sobic008G192600 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic010G224300--Sobic004G102000 Sobic008G106000 Sobic008G106000 Sobic010G224300--Sobic008G106000 Sobic001G544200 Sobic001G544200 Sobic010G224300--Sobic001G544200 Sobic006G123900 Sobic006G123900 Sobic010G224300--Sobic006G123900 Sobic008G078100 Sobic008G078100 Sobic010G224300--Sobic008G078100 Sobic010G224300--Sobic001G511500 Sobic010G224300--Sobic006G251900 Sobic002G077200 Sobic002G077200 Sobic010G224300--Sobic002G077200 Sobic004G094500 Sobic004G094500 Sobic010G224300--Sobic004G094500 Sobic002G127100--Sobic001G347300 Sobic002G127100--Sobic006G251900 Sobic002G127100--Sobic007G126600 Sobic002G127100--Sobic003G108700 Sobic008G113100 Sobic008G113100 Sobic002G127100--Sobic008G113100 Sobic007G146900 Sobic007G146900 Sobic002G127100--Sobic007G146900 Sobic004G257400 Sobic004G257400 Sobic002G127100--Sobic004G257400 Sobic005G021500 Sobic005G021500 Sobic002G127100--Sobic005G021500 Sobic001G088100 Sobic001G088100 Sobic002G127100--Sobic001G088100 Sobic004G049700 Sobic004G049700 Sobic007G004000--Sobic004G049700 Sobic007G004000--Sobic002G127100 Sobic007G004000--Sobic006G161000 Sobic002G388500 Sobic002G388500 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G168300 Sobic007G168300 Sobic007G004000--Sobic007G168300 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic003G114500 Sobic003G114500 Sobic007G004000--Sobic003G114500 Sobic004G102000--Sobic010G224300 Sobic004G102000--Sobic009G083400 Sobic004G102000--Sobic008G106000 Sobic004G102000--Sobic006G251900 Sobic001G473000 Sobic001G473000 Sobic004G102000--Sobic001G473000 Sobic001G174900 Sobic001G174900 Sobic004G102000--Sobic001G174900 Sobic004G102000--Sobic004G094500 Sobic007G043500 Sobic007G043500 Sobic004G102000--Sobic007G043500 Sobic007G143300 Sobic007G143300 Sobic004G102000--Sobic007G143300 Sobic008G054500 Sobic008G054500 Sobic004G216500--Sobic008G054500 Sobic004G216500--Sobic007G126600 Sobic004G216500--Sobic001G511500 Sobic003G119000 Sobic003G119000 Sobic004G216500--Sobic003G119000 Sobic009G138800 Sobic009G138800 Sobic004G216500--Sobic009G138800 Sobic004G216500--Sobic003G108700 Sobic004G216500--Sobic008G192600 Sobic007G167500 Sobic007G167500 Sobic004G216500--Sobic007G167500 Sobic001G107900 Sobic001G107900 Sobic004G216500--Sobic001G107900 Sobic003G038100 Sobic003G038100 Sobic006G161000--Sobic003G038100 Sobic006G161000--Sobic004G049700 Sobic001G405300 Sobic001G405300 Sobic006G161000--Sobic001G405300 Sobic006G186400 Sobic006G186400 Sobic006G161000--Sobic006G186400 Sobic010G077500 Sobic010G077500 Sobic006G161000--Sobic010G077500 Sobic007G026000 Sobic007G026000 Sobic006G161000--Sobic007G026000 Sobic006G161000--Sobic003G114500 Sobic004G180900 Sobic004G180900 Sobic006G161000--Sobic004G180900 Sobic006G161000--Sobic007G146900 Sobic002G063900 Sobic002G063900 Sobic002G278000--Sobic002G063900 Sobic006G116100 Sobic006G116100 Sobic002G278000--Sobic006G116100 Sobic005G013200 Sobic005G013200 Sobic002G278000--Sobic005G013200 Sobic002G278000--Sobic001G511500 Sobic008G149800 Sobic008G149800 Sobic002G278000--Sobic008G149800 Sobic005G015900 Sobic005G015900 Sobic002G278000--Sobic005G015900 Sobic008G028700 Sobic008G028700 Sobic002G278000--Sobic008G028700 Sobic008G173100 Sobic008G173100 Sobic002G278000--Sobic008G173100 Sobic001G167200 Sobic001G167200 Sobic002G278000--Sobic001G167200 Sobic001G347300--Sobic007G126600 Sobic002G145101 Sobic002G145101 Sobic001G347300--Sobic002G145101 Sobic007G065400 Sobic007G065400 Sobic001G347300--Sobic007G065400 Sobic002G243900 Sobic002G243900 Sobic001G347300--Sobic002G243900 Sobic001G347300--Sobic003G108700 Sobic001G347300--Sobic001G511500 Sobic001G347300--Sobic006G251900 Sobic003G200200 Sobic003G200200 Sobic001G347300--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic001G347300--Sobic003G170100
Octagon: transcription factors


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