Gene annotation
Transcriptome id Sobic.007G004000.1
Synonym SWC2, Sb07g000560, ATSWC2
Functional annotation YL1 nuclear protein C-terminal domain containing protein, expressed
UniProt C5YLF7
Pfam PF08265 PF05764
Panther DB PTHR13275
NCBI CDD KOG2897; DNA-binding protein YL1 and related proteins
KEGG Orthology K11664; VPS72, TCFL1, vacuolar protein sorting-associated protein 72
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006338chromatin remodeling GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G36740 : sequence-specific DNA binding transcription factors;DNA binding;DNA binding
RAP-DB (Rice) LOC_Os08g09320.1 : YL1 nuclear protein C-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006700 , Zm00025a040138
Brachypodium KQJ94758
Barley -
Wheat TraesCS7B02G228400 , TraesCS7D02G324500 , TraesCS7A02G327700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G004000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G049700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.002G127100 RNA-binding protein Luc7-like, putative, expressed -
3 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2
4 Sobic.002G388500 SART-1 family protein, putative, expressed K11984: SART1, HAF, U4/U6.U5 tri-snRNP-associated protein 1
5 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
6 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
7 Sobic.006G251900 - -
8 Sobic.010G130100 BAH domain containing protein, expressed -
9 Sobic.003G114500 zinc knuckle family protein, putative, expressed -
10 Sobic.005G200800 homeobox domain containing protein, expressed -
11 Sobic.009G083400 RNA recognition motif family protein, expressed -
12 Sobic.009G020500 expressed protein -
13 Sobic.002G344000 expressed protein -
14 Sobic.001G424600 digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
15 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
16 Sobic.002G383300 MYST-like histone acetyltransferase 1, putative, expressed K11308: MYST1, MOF, histone acetyltransferase MYST1
17 Sobic.008G011000 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
18 Sobic.003G012100 smr domain containing protein, expressed -
19 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
20 Sobic.007G000300 expressed protein -


Gene co-expression network
sample Sobic007G004000 Sobic007G004000 Sobic004G049700 Sobic004G049700 Sobic007G004000--Sobic004G049700 Sobic002G127100 Sobic002G127100 Sobic007G004000--Sobic002G127100 Sobic006G161000 Sobic006G161000 Sobic007G004000--Sobic006G161000 Sobic002G388500 Sobic002G388500 Sobic007G004000--Sobic002G388500 Sobic007G009700 Sobic007G009700 Sobic007G004000--Sobic007G009700 Sobic007G168300 Sobic007G168300 Sobic007G004000--Sobic007G168300 Sobic006G251900 Sobic006G251900 Sobic007G004000--Sobic006G251900 Sobic010G130100 Sobic010G130100 Sobic007G004000--Sobic010G130100 Sobic003G114500 Sobic003G114500 Sobic007G004000--Sobic003G114500 Sobic001G424600 Sobic001G424600 Sobic004G049700--Sobic001G424600 Sobic002G063900 Sobic002G063900 Sobic004G049700--Sobic002G063900 Sobic002G148400 Sobic002G148400 Sobic004G049700--Sobic002G148400 Sobic006G039800 Sobic006G039800 Sobic004G049700--Sobic006G039800 Sobic002G154000 Sobic002G154000 Sobic004G049700--Sobic002G154000 Sobic004G049700--Sobic006G161000 Sobic001G346900 Sobic001G346900 Sobic004G049700--Sobic001G346900 Sobic001G461400 Sobic001G461400 Sobic004G049700--Sobic001G461400 Sobic004G049700--Sobic007G004000 Sobic001G347300 Sobic001G347300 Sobic002G127100--Sobic001G347300 Sobic002G127100--Sobic006G251900 Sobic007G126600 Sobic007G126600 Sobic002G127100--Sobic007G126600 Sobic003G108700 Sobic003G108700 Sobic002G127100--Sobic003G108700 Sobic008G113100 Sobic008G113100 Sobic002G127100--Sobic008G113100 Sobic007G146900 Sobic007G146900 Sobic002G127100--Sobic007G146900 Sobic004G257400 Sobic004G257400 Sobic002G127100--Sobic004G257400 Sobic005G021500 Sobic005G021500 Sobic002G127100--Sobic005G021500 Sobic001G088100 Sobic001G088100 Sobic002G127100--Sobic001G088100 Sobic003G038100 Sobic003G038100 Sobic006G161000--Sobic003G038100 Sobic006G161000--Sobic004G049700 Sobic001G405300 Sobic001G405300 Sobic006G161000--Sobic001G405300 Sobic006G186400 Sobic006G186400 Sobic006G161000--Sobic006G186400 Sobic010G077500 Sobic010G077500 Sobic006G161000--Sobic010G077500 Sobic007G026000 Sobic007G026000 Sobic006G161000--Sobic007G026000 Sobic006G161000--Sobic003G114500 Sobic004G180900 Sobic004G180900 Sobic006G161000--Sobic004G180900 Sobic006G161000--Sobic007G146900 Sobic009G126300 Sobic009G126300 Sobic002G388500--Sobic009G126300 Sobic009G182600 Sobic009G182600 Sobic002G388500--Sobic009G182600 Sobic010G078900 Sobic010G078900 Sobic002G388500--Sobic010G078900 Sobic003G252100 Sobic003G252100 Sobic002G388500--Sobic003G252100 Sobic008G011000 Sobic008G011000 Sobic002G388500--Sobic008G011000 Sobic001G493700 Sobic001G493700 Sobic002G388500--Sobic001G493700 Sobic004G223000 Sobic004G223000 Sobic002G388500--Sobic004G223000 Sobic004G088501 Sobic004G088501 Sobic002G388500--Sobic004G088501 Sobic001G230000 Sobic001G230000 Sobic002G388500--Sobic001G230000 Sobic009G044800 Sobic009G044800 Sobic007G009700--Sobic009G044800 Sobic007G009700--Sobic001G088100 Sobic001G227400 Sobic001G227400 Sobic007G009700--Sobic001G227400 Sobic001G473600 Sobic001G473600 Sobic007G009700--Sobic001G473600 Sobic006G096900 Sobic006G096900 Sobic007G009700--Sobic006G096900 Sobic003G360400 Sobic003G360400 Sobic007G009700--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic007G009700--Sobic003G352200 Sobic001G025000 Sobic001G025000 Sobic007G009700--Sobic001G025000 Sobic003G379200 Sobic003G379200 Sobic007G009700--Sobic003G379200 Sobic003G042400 Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic007G168300--Sobic002G154000 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic001G376900 Sobic001G376900 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic006G251900--Sobic001G347300 Sobic006G251900--Sobic007G126600 Sobic009G083400 Sobic009G083400 Sobic006G251900--Sobic009G083400 Sobic006G251900--Sobic003G108700 Sobic001G511500 Sobic001G511500 Sobic006G251900--Sobic001G511500 Sobic004G216500 Sobic004G216500 Sobic006G251900--Sobic004G216500 Sobic006G251900--Sobic002G127100 Sobic008G192600 Sobic008G192600 Sobic006G251900--Sobic008G192600 Sobic003G038500 Sobic003G038500 Sobic006G251900--Sobic003G038500 Sobic001G393900 Sobic001G393900 Sobic010G130100--Sobic001G393900 Sobic010G130100--Sobic007G168300 Sobic002G374300 Sobic002G374300 Sobic010G130100--Sobic002G374300 Sobic003G309050 Sobic003G309050 Sobic010G130100--Sobic003G309050 Sobic007G000300 Sobic007G000300 Sobic010G130100--Sobic007G000300 Sobic002G422100 Sobic002G422100 Sobic010G130100--Sobic002G422100 Sobic010G130100--Sobic001G346900 Sobic006G267600 Sobic006G267600 Sobic010G130100--Sobic006G267600 Sobic010G130100--Sobic002G154000 Sobic009G151200 Sobic009G151200 Sobic003G114500--Sobic009G151200 Sobic002G383300 Sobic002G383300 Sobic003G114500--Sobic002G383300 Sobic003G114500--Sobic006G161000 Sobic003G114500--Sobic010G077500 Sobic003G114500--Sobic004G049700 Sobic003G114500--Sobic001G424600 Sobic007G056500 Sobic007G056500 Sobic003G114500--Sobic007G056500 Sobic007G187600 Sobic007G187600 Sobic003G114500--Sobic007G187600 Sobic006G049100 Sobic006G049100 Sobic003G114500--Sobic006G049100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.