Gene annotation
Transcriptome id Sobic.008G011000.1
Synonym SMU2, Sb08g001030
Functional annotation splicing factor, putative, expressed
UniProt C5YQ74
Pfam PF07807 PF07808
Panther DB PTHR12765 PTHR12765:SF5
NCBI CDD KOG2498; IK cytokine down-regulator of HLA class II
KEGG Orthology K13109; IK, RED, IK cytokine
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT2G26460 : RED family protein
RAP-DB (Rice) LOC_Os11g04950.1 : splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a028947 , Zm00025a053676
Brachypodium PNT64246 , KQJ89586
Barley HORVU4Hr1G025830.2 , HORVU4Hr1G025830.3 , HORVU4Hr1G025830.1 , HORVU4Hr1G025830.6 , HORVU4Hr1G025830.4 , HORVU4Hr1G025830.5
Wheat TraesCS4B02G133600 , TraesCS4D02G128600 , TraesCS4A02G185000
Populus -


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cDNA sequences
Sobic.008G011000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G503900 MT-A70 domain containing protein, expressed -
2 Sobic.002G316600 expressed protein -
3 Sobic.008G044100 expressed protein -
4 Sobic.001G072500 expressed protein K12879: THO complex subunit 2
5 Sobic.004G314000 expressed protein -
6 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
7 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
8 Sobic.002G127550 - -
9 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
10 Sobic.010G136200 oxidoreductase/ transition metal ion binding protein, putative, expressed -
11 Sobic.003G401600 expressed protein K12879: THO complex subunit 2
12 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
13 Sobic.008G018900 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
14 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
15 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
16 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
17 Sobic.003G156500 WD domain, G-beta repeat domain containing protein, expressed K14824: ERB1, ribosome biogenesis protein ERB1
18 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
19 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
20 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G011000 Sobic008G011000 Sobic001G503900 Sobic001G503900 Sobic008G011000--Sobic001G503900 Sobic002G316600 Sobic002G316600 Sobic008G011000--Sobic002G316600 Sobic008G044100 Sobic008G044100 Sobic008G011000--Sobic008G044100 Sobic001G072500 Sobic001G072500 Sobic008G011000--Sobic001G072500 Sobic004G314000 Sobic004G314000 Sobic008G011000--Sobic004G314000 Sobic007G212300 Sobic007G212300 Sobic008G011000--Sobic007G212300 Sobic003G260400 Sobic003G260400 Sobic008G011000--Sobic003G260400 Sobic002G127550 Sobic002G127550 Sobic008G011000--Sobic002G127550 Sobic001G230000 Sobic001G230000 Sobic008G011000--Sobic001G230000 Sobic001G503900--Sobic008G011000 Sobic003G156500 Sobic003G156500 Sobic001G503900--Sobic003G156500 Sobic001G503900--Sobic002G316600 Sobic001G503900--Sobic003G260400 Sobic008G185800 Sobic008G185800 Sobic001G503900--Sobic008G185800 Sobic010G169600 Sobic010G169600 Sobic001G503900--Sobic010G169600 Sobic006G184900 Sobic006G184900 Sobic001G503900--Sobic006G184900 Sobic010G136200 Sobic010G136200 Sobic001G503900--Sobic010G136200 Sobic002G388500 Sobic002G388500 Sobic001G503900--Sobic002G388500 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic010G010700 Sobic010G010700 Sobic008G044100--Sobic010G010700 Sobic004G134200 Sobic004G134200 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic003G155100 Sobic003G155100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic008G044100--Sobic002G316600 Sobic002G169633 Sobic002G169633 Sobic001G072500--Sobic002G169633 Sobic003G401600 Sobic003G401600 Sobic001G072500--Sobic003G401600 Sobic004G263600 Sobic004G263600 Sobic001G072500--Sobic004G263600 Sobic004G209600 Sobic004G209600 Sobic001G072500--Sobic004G209600 Sobic001G072500--Sobic002G316600 Sobic001G072500--Sobic004G314000 Sobic006G131500 Sobic006G131500 Sobic001G072500--Sobic006G131500 Sobic001G072500--Sobic010G206900 Sobic010G139000 Sobic010G139000 Sobic001G072500--Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic005G008800 Sobic005G008800 Sobic004G314000--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic003G194500 Sobic003G194500 Sobic007G212300--Sobic003G194500 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic003G360400 Sobic003G360400 Sobic007G212300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic007G212300--Sobic003G095900 Sobic001G227400 Sobic001G227400 Sobic007G212300--Sobic001G227400 Sobic007G105100 Sobic007G105100 Sobic007G212300--Sobic007G105100 Sobic007G212300--Sobic005G008800 Sobic001G154900 Sobic001G154900 Sobic007G212300--Sobic001G154900 Sobic003G260400--Sobic010G079500 Sobic003G260400--Sobic003G095900 Sobic002G399800 Sobic002G399800 Sobic003G260400--Sobic002G399800 Sobic003G101700 Sobic003G101700 Sobic003G260400--Sobic003G101700 Sobic003G260400--Sobic002G316600 Sobic010G003400 Sobic010G003400 Sobic003G260400--Sobic010G003400 Sobic001G089600 Sobic001G089600 Sobic003G260400--Sobic001G089600 Sobic001G453400 Sobic001G453400 Sobic003G260400--Sobic001G453400 Sobic001G393900 Sobic001G393900 Sobic003G260400--Sobic001G393900 Sobic003G138500 Sobic003G138500 Sobic002G127550--Sobic003G138500 Sobic010G126000 Sobic010G126000 Sobic002G127550--Sobic010G126000 Sobic002G127550--Sobic008G044100 Sobic004G034800 Sobic004G034800 Sobic002G127550--Sobic004G034800 Sobic002G127550--Sobic001G194200 Sobic002G127550--Sobic008G001200 Sobic002G127550--Sobic010G010700 Sobic004G291900 Sobic004G291900 Sobic002G127550--Sobic004G291900 Sobic002G127550--Sobic004G209600 Sobic001G230000--Sobic010G206900 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic001G230000--Sobic008G044100
Octagon: transcription factors


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