Gene annotation
Transcriptome id Sobic.008G018900.1
Synonym Sb08g001630
Functional annotation protein of unknown function, DUF618 domain containing protein, expressed
UniProt C5YQP0
Pfam PF04818
Panther DB PTHR12460
NCBI CDD KOG2669; Regulator of nuclear mRNA
KEGG Orthology K15559; regulator of Ty1 transposition protein 103
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65180 : ENTH/VHS family protein
RAP-DB (Rice) LOC_Os11g03570.1 : protein of unknown function, DUF618 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028990 , Zm00025a013135 , Zm00025a053725 , Zm00025a033377
Brachypodium KQJ89527
Barley HORVU4Hr1G026870.7 , HORVU4Hr1G026870.5 , HORVU4Hr1G026870.4 , HORVU4Hr1G026870.2 , HORVU4Hr1G026870.1 , HORVU4Hr1G026870.9 , HORVU4Hr1G026870.8 , HORVU4Hr1G026870.14 , HORVU4Hr1G026870.13 , HORVU4Hr1G026870.12 , HORVU4Hr1G026870.11 , HORVU4Hr1G026870.10 , HORVU0Hr1G010590.1 , HORVU0Hr1G010590.3 , HORVU0Hr1G010590.2 , HORVU0Hr1G010590.5 , HORVU0Hr1G010590.4 , HORVU0Hr1G010590.7 , HORVU0Hr1G010590.6 , HORVU0Hr1G010590.8
Wheat TraesCS5D02G150900 , TraesCS5A02G141400 , TraesCS4A02G188700 , TraesCS4B02G128200 , TraesCS4D02G124400
Populus -


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cDNA sequences
Sobic.008G018900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
3 Sobic.002G316600 expressed protein -
4 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
5 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
6 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
9 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
10 Sobic.001G373900 MYB family transcription factor, putative, expressed -
11 Sobic.010G010700 PHD-finger family protein, expressed -
12 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
13 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
14 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
15 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
16 Sobic.003G260400 ATP dependent DNA ligase family protein, putative, expressed K10747: DNA ligase 1
17 Sobic.004G334300 ATMAK10, putative, expressed -
18 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
19 Sobic.008G044100 expressed protein -
20 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -


Gene co-expression network
sample Sobic008G018900 Sobic008G018900 Sobic003G186000 Sobic003G186000 Sobic008G018900--Sobic003G186000 Sobic006G055200 Sobic006G055200 Sobic008G018900--Sobic006G055200 Sobic002G316600 Sobic002G316600 Sobic008G018900--Sobic002G316600 Sobic003G205200 Sobic003G205200 Sobic008G018900--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic008G018900--Sobic001G194200 Sobic002G308700 Sobic002G308700 Sobic008G018900--Sobic002G308700 Sobic008G001200 Sobic008G001200 Sobic008G018900--Sobic008G001200 Sobic004G276400 Sobic004G276400 Sobic008G018900--Sobic004G276400 Sobic003G389200 Sobic003G389200 Sobic008G018900--Sobic003G389200 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic006G055200--Sobic001G194200 Sobic006G055200--Sobic010G010700 Sobic006G055200--Sobic005G001000 Sobic006G055200--Sobic004G276400 Sobic004G291900 Sobic004G291900 Sobic006G055200--Sobic004G291900 Sobic006G055200--Sobic003G186000 Sobic001G289800 Sobic001G289800 Sobic006G055200--Sobic001G289800 Sobic004G263600 Sobic004G263600 Sobic006G055200--Sobic004G263600 Sobic001G002000 Sobic001G002000 Sobic006G055200--Sobic001G002000 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic003G205200--Sobic001G370900 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic001G194200--Sobic004G291900 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic002G308700--Sobic003G186000 Sobic002G308700--Sobic004G276400 Sobic005G162500 Sobic005G162500 Sobic002G308700--Sobic005G162500 Sobic002G308700--Sobic010G105200 Sobic004G334300 Sobic004G334300 Sobic002G308700--Sobic004G334300 Sobic002G133300 Sobic002G133300 Sobic002G308700--Sobic002G133300 Sobic001G457800 Sobic001G457800 Sobic002G308700--Sobic001G457800 Sobic001G151100 Sobic001G151100 Sobic002G308700--Sobic001G151100 Sobic002G308700--Sobic002G316600 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic009G256300 Sobic009G256300 Sobic003G389200--Sobic009G256300 Sobic003G389200--Sobic010G206900 Sobic003G360400 Sobic003G360400 Sobic003G389200--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic001G540400 Sobic001G540400 Sobic003G389200--Sobic001G540400 Sobic007G105100 Sobic007G105100 Sobic003G389200--Sobic007G105100 Sobic001G230000 Sobic001G230000 Sobic003G389200--Sobic001G230000
Octagon: transcription factors


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