Gene annotation
Transcriptome id Sobic.001G373900.1
Synonym Sb01g035520
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5X0L7
Pfam -
Panther DB PTHR13859:SF16 PTHR13859
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47820 : -
RAP-DB (Rice) LOC_Os03g22560.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a052388 , Zm00025a002426
Brachypodium KQK21718 , KQK21719 , KQK21717 , PNT77423 , PNT77426 , PNT77424 , PNT77425
Barley HORVU4Hr1G048210.3 , HORVU4Hr1G048210.1 , HORVU4Hr1G048210.5 , HORVU4Hr1G048210.4 , HORVU4Hr1G048210.9 , HORVU4Hr1G048210.8 , HORVU4Hr1G048210.2 , HORVU4Hr1G048210.7 , HORVU4Hr1G048210.6 , HORVU4Hr1G047610.10 , HORVU4Hr1G047610.11 , HORVU4Hr1G047610.12 , HORVU4Hr1G047610.13 , HORVU0Hr1G022160.1 , HORVU0Hr1G022160.3 , HORVU0Hr1G022160.2 , HORVU0Hr1G022160.5 , HORVU0Hr1G022160.4 , HORVU0Hr1G022160.7 , HORVU0Hr1G022160.6 , HORVU0Hr1G022160.8 , HORVU4Hr1G047610.6 , HORVU4Hr1G047610.7 , HORVU4Hr1G047610.4 , HORVU4Hr1G047610.5 , HORVU4Hr1G047610.2 , HORVU4Hr1G047610.3 , HORVU4Hr1G047610.1 , HORVU4Hr1G047610.8 , HORVU4Hr1G047610.9
Wheat TraesCS4B02G154500 , TraesCS4B02G154500 , TraesCS7A02G444600 , TraesCS4B02G155200 , TraesCS4B02G155200 , TraesCS7B02G343600 , TraesCS7B02G343600 , TraesCS4B02G154500 , TraesCS4D02G167100 , TraesCS4D02G165400 , TraesCS4A02G139100 , TraesCS4A02G139100 , TraesCS7A02G444600 , TraesCS4A02G139000 , TraesCS7D02G433300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G519900 ribonuclease protein, putative, expressed K12585: DIS3, exosome complex exonuclease DIS3/RRP44
2 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
3 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
4 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
5 Sobic.004G334300 ATMAK10, putative, expressed -
6 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
9 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
10 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
11 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
12 Sobic.002G316600 expressed protein -
13 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
14 Sobic.008G018900 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
15 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
16 Sobic.003G247500 expressed protein -
17 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
18 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase


Gene co-expression network
sample Sobic001G373900 Sobic001G373900 Sobic001G519900 Sobic001G519900 Sobic001G373900--Sobic001G519900 Sobic001G375100 Sobic001G375100 Sobic001G373900--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic001G373900--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic001G373900--Sobic007G103100 Sobic004G334300 Sobic004G334300 Sobic001G373900--Sobic004G334300 Sobic003G186000 Sobic003G186000 Sobic001G373900--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic001G373900--Sobic008G001200 Sobic003G195000 Sobic003G195000 Sobic001G373900--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G373900--Sobic002G146300 Sobic001G519900--Sobic001G373900 Sobic001G519900--Sobic004G334300 Sobic002G308700 Sobic002G308700 Sobic001G519900--Sobic002G308700 Sobic001G519900--Sobic003G186000 Sobic005G162500 Sobic005G162500 Sobic001G519900--Sobic005G162500 Sobic004G356700 Sobic004G356700 Sobic001G519900--Sobic004G356700 Sobic001G519900--Sobic001G375100 Sobic001G192000 Sobic001G192000 Sobic001G519900--Sobic001G192000 Sobic006G259800 Sobic006G259800 Sobic001G519900--Sobic006G259800 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic002G316600 Sobic002G316600 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic001G527800 Sobic001G527800 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic007G103100--Sobic006G055200 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic004G334300--Sobic002G308700 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G334300--Sobic004G276400 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic003G195000--Sobic001G289800 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic003G195000--Sobic002G146300 Sobic003G195000--Sobic002G275700 Sobic003G195000--Sobic005G001000 Sobic002G142900 Sobic002G142900 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic003G195000--Sobic001G192000 Sobic002G146300--Sobic003G205200 Sobic001G370900 Sobic001G370900 Sobic002G146300--Sobic001G370900 Sobic010G139600 Sobic010G139600 Sobic002G146300--Sobic010G139600 Sobic002G146300--Sobic005G001000 Sobic004G001500 Sobic004G001500 Sobic002G146300--Sobic004G001500 Sobic002G146300--Sobic008G001200 Sobic002G146300--Sobic001G194200 Sobic007G075400 Sobic007G075400 Sobic002G146300--Sobic007G075400 Sobic002G146300--Sobic009G256400
Octagon: transcription factors


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