Gene annotation
Transcriptome id Sobic.001G519900.1
Synonym Sb01g048480, EMB2763
Functional annotation ribonuclease protein, putative, expressed
UniProt C5WZX9
Pfam PF13638 PF00773
Panther DB PTHR23355 PTHR23355:SF35
NCBI CDD -
KEGG Orthology K12585; DIS3, exosome complex exonuclease DIS3/RRP44
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17510 : ribonuclease II family protein
RAP-DB (Rice) LOC_Os03g03710.1 : ribonuclease protein, putative, expressed
MaizeGDB (Corn) Zm00025a000404
Brachypodium PNT78269
Barley HORVU4Hr1G082690.1 , HORVU4Hr1G082690.3 , HORVU4Hr1G082690.2 , HORVU4Hr1G082690.5 , HORVU4Hr1G082690.4 , HORVU4Hr1G082690.7 , HORVU4Hr1G082690.6 , HORVU4Hr1G082690.9 , HORVU4Hr1G082690.8
Wheat TraesCS4D02G319300 , TraesCS4D02G319300 , TraesCS4D02G319300 , TraesCS4D02G319300 , TraesCS4D02G319300 , TraesCS5A02G495000 , TraesCS5A02G495000 , TraesCS5A02G495000 , TraesCS4B02G322900 , TraesCS4B02G322900 , TraesCS4B02G322900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373900 MYB family transcription factor, putative, expressed -
2 Sobic.004G334300 ATMAK10, putative, expressed -
3 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
4 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
6 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
7 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
8 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
9 Sobic.006G259800 inducer of CBF expression 2, putative, expressed -
10 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
11 Sobic.002G424700 ATPOT1, putative, expressed -
12 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
13 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
14 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
15 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
16 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
17 Sobic.004G244900 expressed protein -
18 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
19 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
20 Sobic.001G194200 diacylglycerol kinase, putative, expressed -


Gene co-expression network
sample Sobic001G519900 Sobic001G519900 Sobic001G373900 Sobic001G373900 Sobic001G519900--Sobic001G373900 Sobic004G334300 Sobic004G334300 Sobic001G519900--Sobic004G334300 Sobic002G308700 Sobic002G308700 Sobic001G519900--Sobic002G308700 Sobic003G186000 Sobic003G186000 Sobic001G519900--Sobic003G186000 Sobic005G162500 Sobic005G162500 Sobic001G519900--Sobic005G162500 Sobic004G356700 Sobic004G356700 Sobic001G519900--Sobic004G356700 Sobic001G375100 Sobic001G375100 Sobic001G519900--Sobic001G375100 Sobic001G192000 Sobic001G192000 Sobic001G519900--Sobic001G192000 Sobic006G259800 Sobic006G259800 Sobic001G519900--Sobic006G259800 Sobic001G373900--Sobic001G519900 Sobic001G373900--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic001G373900--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic001G373900--Sobic007G103100 Sobic001G373900--Sobic004G334300 Sobic001G373900--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic001G373900--Sobic008G001200 Sobic003G195000 Sobic003G195000 Sobic001G373900--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G373900--Sobic002G146300 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic004G334300--Sobic002G308700 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G276400 Sobic004G276400 Sobic004G334300--Sobic004G276400 Sobic002G308700--Sobic003G186000 Sobic002G308700--Sobic004G276400 Sobic002G308700--Sobic005G162500 Sobic010G105200 Sobic010G105200 Sobic002G308700--Sobic010G105200 Sobic002G308700--Sobic004G334300 Sobic002G133300 Sobic002G133300 Sobic002G308700--Sobic002G133300 Sobic002G308700--Sobic001G457800 Sobic001G151100 Sobic001G151100 Sobic002G308700--Sobic001G151100 Sobic002G316600 Sobic002G316600 Sobic002G308700--Sobic002G316600 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic008G088872 Sobic008G088872 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic004G356700--Sobic008G001200 Sobic004G356700--Sobic001G194200 Sobic004G356700--Sobic002G146300 Sobic004G001500 Sobic004G001500 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G356700--Sobic004G244900 Sobic003G155100 Sobic003G155100 Sobic004G356700--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic004G356700--Sobic006G219600 Sobic004G356700--Sobic004G334300 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic001G375100--Sobic005G001000 Sobic002G275700 Sobic002G275700 Sobic001G192000--Sobic002G275700 Sobic009G255700 Sobic009G255700 Sobic001G192000--Sobic009G255700 Sobic001G192000--Sobic005G162500 Sobic001G192000--Sobic008G088872 Sobic001G333100 Sobic001G333100 Sobic001G192000--Sobic001G333100 Sobic001G192000--Sobic003G195000 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic003G221400 Sobic003G221400 Sobic001G192000--Sobic003G221400 Sobic001G374100 Sobic001G374100 Sobic006G259800--Sobic001G374100 Sobic009G038900 Sobic009G038900 Sobic006G259800--Sobic009G038900 Sobic001G244700 Sobic001G244700 Sobic006G259800--Sobic001G244700 Sobic001G530900 Sobic001G530900 Sobic006G259800--Sobic001G530900 Sobic006G259800--Sobic004G244900 Sobic004G042200 Sobic004G042200 Sobic006G259800--Sobic004G042200 Sobic008G044100 Sobic008G044100 Sobic006G259800--Sobic008G044100 Sobic006G259800--Sobic001G519900 Sobic006G259800--Sobic003G155100
Octagon: transcription factors


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