Gene annotation
Transcriptome id Sobic.008G054000.1
Synonym Sb08g004570
Functional annotation tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed
UniProt A0A1B6PBN4
Pfam PF12627 PF01743
Panther DB PTHR13734 PTHR13734:SF5
NCBI CDD KOG2159; tRNA nucleotidyltransferase/poly(A) polymerase
KEGG Orthology -
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G22660 : Polynucleotide adenylyltransferase family protein
RAP-DB (Rice) LOC_Os12g07350.1 : tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054047 , Zm00025a013725
Brachypodium -
Barley HORVU5Hr1G035960.20 , HORVU5Hr1G035960.12 , HORVU5Hr1G035960.13 , HORVU5Hr1G035960.10 , HORVU5Hr1G035960.11 , HORVU5Hr1G035960.16 , HORVU5Hr1G035960.17 , HORVU5Hr1G035960.14 , HORVU5Hr1G035960.15 , HORVU5Hr1G035960.18 , HORVU5Hr1G035960.19 , HORVU5Hr1G035960.8 , HORVU5Hr1G035960.9 , HORVU5Hr1G035960.6 , HORVU5Hr1G035960.1 , HORVU5Hr1G035960.2 , HORVU5Hr1G035960.3 , HORVU5Hr1G035960.4 , HORVU5Hr1G035960.5
Wheat TraesCS5D02G130400 , TraesCS5D02G130400 , TraesCS5B02G122100 , TraesCS5B02G122100 , TraesCS2B02G064300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G244900 expressed protein -
2 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
3 Sobic.004G334300 ATMAK10, putative, expressed -
4 Sobic.002G257750 - -
5 Sobic.008G044100 expressed protein -
6 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
7 Sobic.003G101700 dnaJ domain containing protein, expressed -
8 Sobic.002G316600 expressed protein -
9 Sobic.002G344000 expressed protein -
10 Sobic.002G211800 AT-rich interaction region, putative, expressed -
11 Sobic.010G132600 selenoprotein O, putative, expressed -
12 Sobic.005G122700 PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G168100 BZIP protein, putative, expressed -
14 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
15 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
16 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
17 Sobic.002G308700 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
19 Sobic.003G166750 - K15188: cyclin T
20 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3


Gene co-expression network
sample Sobic008G054000 Sobic008G054000 Sobic004G244900 Sobic004G244900 Sobic008G054000--Sobic004G244900 Sobic004G356700 Sobic004G356700 Sobic008G054000--Sobic004G356700 Sobic004G334300 Sobic004G334300 Sobic008G054000--Sobic004G334300 Sobic002G257750 Sobic002G257750 Sobic008G054000--Sobic002G257750 Sobic008G044100 Sobic008G044100 Sobic008G054000--Sobic008G044100 Sobic003G398700 Sobic003G398700 Sobic008G054000--Sobic003G398700 Sobic003G101700 Sobic003G101700 Sobic008G054000--Sobic003G101700 Sobic002G316600 Sobic002G316600 Sobic008G054000--Sobic002G316600 Sobic002G344000 Sobic002G344000 Sobic008G054000--Sobic002G344000 Sobic001G457800 Sobic001G457800 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic004G244900--Sobic008G001200 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic002G275700 Sobic002G275700 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic002G146300 Sobic002G146300 Sobic004G356700--Sobic002G146300 Sobic004G001500 Sobic004G001500 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic004G356700--Sobic006G219600 Sobic004G356700--Sobic004G334300 Sobic003G186000 Sobic003G186000 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic010G123600 Sobic010G123600 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic004G334300--Sobic005G162500 Sobic004G334300--Sobic004G244900 Sobic004G276400 Sobic004G276400 Sobic004G334300--Sobic004G276400 Sobic002G257750--Sobic003G398700 Sobic005G106600 Sobic005G106600 Sobic002G257750--Sobic005G106600 Sobic002G257750--Sobic003G119600 Sobic003G253600 Sobic003G253600 Sobic002G257750--Sobic003G253600 Sobic006G185100 Sobic006G185100 Sobic002G257750--Sobic006G185100 Sobic003G388100 Sobic003G388100 Sobic002G257750--Sobic003G388100 Sobic006G050700 Sobic006G050700 Sobic002G257750--Sobic006G050700 Sobic002G257750--Sobic004G244900 Sobic010G132600 Sobic010G132600 Sobic002G257750--Sobic010G132600 Sobic010G010700 Sobic010G010700 Sobic008G044100--Sobic010G010700 Sobic004G134200 Sobic004G134200 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic008G044100--Sobic002G316600 Sobic003G398700--Sobic002G257750 Sobic001G456900 Sobic001G456900 Sobic003G398700--Sobic001G456900 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic010G126000 Sobic010G126000 Sobic003G398700--Sobic010G126000 Sobic003G101700--Sobic002G316600 Sobic010G079500 Sobic010G079500 Sobic003G101700--Sobic010G079500 Sobic003G101700--Sobic002G308700 Sobic003G260400 Sobic003G260400 Sobic003G101700--Sobic003G260400 Sobic001G298900 Sobic001G298900 Sobic003G101700--Sobic001G298900 Sobic003G101700--Sobic001G230000 Sobic003G101700--Sobic008G054000 Sobic003G101700--Sobic004G134200 Sobic003G101700--Sobic004G334300 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic002G344000--Sobic008G044100 Sobic003G360400 Sobic003G360400 Sobic002G344000--Sobic003G360400 Sobic002G211800 Sobic002G211800 Sobic002G344000--Sobic002G211800 Sobic002G344000--Sobic001G230000 Sobic002G344000--Sobic008G113100 Sobic002G344000--Sobic003G398700 Sobic001G354600 Sobic001G354600 Sobic002G344000--Sobic001G354600 Sobic002G344000--Sobic010G206900
Octagon: transcription factors


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