Gene annotation
Transcriptome id Sobic.005G122700.1
Synonym Sb05g018050
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5Y2P4
Pfam PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF516
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G49730 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g28180.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022265
Brachypodium PNT63622
Barley HORVU3Hr1G089060.1 , HORVU3Hr1G089060.2 , HORVU3Hr1G089060.3 , HORVU3Hr1G089060.4 , HORVU3Hr1G089060.5 , HORVU3Hr1G089060.6 , HORVU3Hr1G089060.7 , HORVU3Hr1G089060.8 , HORVU3Hr1G089060.9 , HORVU3Hr1G089060.12 , HORVU3Hr1G089060.13 , HORVU3Hr1G089060.10 , HORVU3Hr1G089060.11 , HORVU3Hr1G089060.14 , HORVU3Hr1G089060.15
Wheat TraesCS3D02G388600 , TraesCS3D02G388600 , TraesCS3A02G394800 , TraesCS3B02G426800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G316600 expressed protein -
2 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
3 Sobic.003G166750 - K15188: cyclin T
4 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
5 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
6 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
7 Sobic.001G289800 BAH domain containing protein, putative, expressed -
8 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
9 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
10 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
11 Sobic.001G261501 - -
12 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
13 Sobic.003G110000 TBC domain containing protein, expressed -
14 Sobic.010G102600 pentatricopeptide, putative, expressed -
15 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
16 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.003G196300 DNA binding protein, putative, expressed -
18 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -


Gene co-expression network
sample Sobic005G122700 Sobic005G122700 Sobic002G316600 Sobic002G316600 Sobic005G122700--Sobic002G316600 Sobic007G103100 Sobic007G103100 Sobic005G122700--Sobic007G103100 Sobic003G166750 Sobic003G166750 Sobic005G122700--Sobic003G166750 Sobic001G529600 Sobic001G529600 Sobic005G122700--Sobic001G529600 Sobic002G133300 Sobic002G133300 Sobic005G122700--Sobic002G133300 Sobic001G527800 Sobic001G527800 Sobic005G122700--Sobic001G527800 Sobic001G289800 Sobic001G289800 Sobic005G122700--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic005G122700--Sobic010G079500 Sobic001G542500 Sobic001G542500 Sobic005G122700--Sobic001G542500 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic002G316600--Sobic001G529600 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic006G055200 Sobic006G055200 Sobic007G103100--Sobic006G055200 Sobic009G165700 Sobic009G165700 Sobic003G166750--Sobic009G165700 Sobic008G001200 Sobic008G001200 Sobic003G166750--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic003G166750--Sobic009G256400 Sobic001G370900 Sobic001G370900 Sobic003G166750--Sobic001G370900 Sobic003G166750--Sobic001G289800 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic003G166750--Sobic001G527800 Sobic001G457800 Sobic001G457800 Sobic003G166750--Sobic001G457800 Sobic001G529600--Sobic002G316600 Sobic001G529600--Sobic010G079500 Sobic001G529600--Sobic003G166750 Sobic009G109200 Sobic009G109200 Sobic001G529600--Sobic009G109200 Sobic001G529600--Sobic001G542500 Sobic001G529600--Sobic001G289800 Sobic007G063000 Sobic007G063000 Sobic001G529600--Sobic007G063000 Sobic005G008800 Sobic005G008800 Sobic001G529600--Sobic005G008800 Sobic001G529600--Sobic005G122700 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic001G527800--Sobic002G316600 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic010G206900 Sobic010G206900 Sobic001G527800--Sobic010G206900 Sobic001G527800--Sobic003G166750 Sobic001G527800--Sobic003G186000 Sobic003G196300 Sobic003G196300 Sobic001G527800--Sobic003G196300 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic004G034900 Sobic004G034900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic001G289800--Sobic007G062800 Sobic005G001000 Sobic005G001000 Sobic001G289800--Sobic005G001000 Sobic010G079500--Sobic001G529600 Sobic010G079500--Sobic002G316600 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic010G079500--Sobic001G527800 Sobic010G079500--Sobic003G196300 Sobic008G132900 Sobic008G132900 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400 Sobic001G542500--Sobic004G291900 Sobic001G542500--Sobic001G289800 Sobic008G085300 Sobic008G085300 Sobic001G542500--Sobic008G085300 Sobic001G542500--Sobic004G276400 Sobic008G098900 Sobic008G098900 Sobic001G542500--Sobic008G098900 Sobic001G542500--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G542500--Sobic001G117200 Sobic001G542500--Sobic009G109200 Sobic004G174200 Sobic004G174200 Sobic001G542500--Sobic004G174200
Octagon: transcription factors


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