Gene annotation
Transcriptome id Sobic.001G527800.2,Sobic.001G527800.1
Synonym ATDCL3, DCL3
Functional annotation DCL2, putative, expressed
UniProt A0A1B6QQZ1
Pfam PF04851 PF14709 PF00035 PF00271 PF03368 PF02170 PF00636
Panther DB PTHR14950 PTHR14950:SF3
NCBI CDD -
KEGG Orthology K11592; DICER1, endoribonuclease Dicer
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0016891endoribonuclease activity, producing 5'-phosphomonoesters GO:0005515protein binding GO:0006396RNA processing GO:0004525ribonuclease III activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G01040 : dicer-like 1
RAP-DB (Rice) LOC_Os03g02970.1 : Dicer, putative, expressed
MaizeGDB (Corn) Zm00025a000295
Brachypodium KQK23926
Barley HORVU4Hr1G084890.9 , HORVU4Hr1G084890.8 , HORVU4Hr1G084890.5 , HORVU4Hr1G084890.4 , HORVU4Hr1G084890.7 , HORVU4Hr1G084890.6 , HORVU4Hr1G084890.1 , HORVU4Hr1G084890.3 , HORVU4Hr1G084890.2 , HORVU4Hr1G084890.18 , HORVU4Hr1G084890.11 , HORVU4Hr1G084890.10 , HORVU4Hr1G084890.13 , HORVU4Hr1G084890.12 , HORVU4Hr1G084890.15 , HORVU4Hr1G084890.14 , HORVU4Hr1G084890.17 , HORVU4Hr1G084890.16
Wheat TraesCS4B02G347300 , TraesCS4B02G347300 , TraesCS4B02G347300 , TraesCS4D02G342300 , TraesCS4D02G342300 , TraesCS4D02G342300 , TraesCS5A02G516000
Populus PNT50340


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G316600 expressed protein -
2 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
3 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
4 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
5 Sobic.003G166750 - K15188: cyclin T
6 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.003G196300 DNA binding protein, putative, expressed -
8 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
9 Sobic.010G123600 WW domain containing protein, expressed -
10 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
11 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
12 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
13 Sobic.004G223000 MIF4G domain containing protein, putative, expressed K14327: UPF2, regulator of nonsense transcripts 2
14 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
15 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
16 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
17 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
18 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
19 Sobic.010G105200 SYD, putative, expressed -
20 Sobic.010G010700 PHD-finger family protein, expressed -


Gene co-expression network
sample Sobic001G527800 Sobic001G527800 Sobic002G316600 Sobic002G316600 Sobic001G527800--Sobic002G316600 Sobic008G001200 Sobic008G001200 Sobic001G527800--Sobic008G001200 Sobic004G276400 Sobic004G276400 Sobic001G527800--Sobic004G276400 Sobic010G206900 Sobic010G206900 Sobic001G527800--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic001G527800--Sobic003G166750 Sobic003G186000 Sobic003G186000 Sobic001G527800--Sobic003G186000 Sobic003G196300 Sobic003G196300 Sobic001G527800--Sobic003G196300 Sobic007G103100 Sobic007G103100 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic002G316600--Sobic003G166750 Sobic001G194200 Sobic001G194200 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic003G166750--Sobic009G256400 Sobic001G370900 Sobic001G370900 Sobic003G166750--Sobic001G370900 Sobic003G166750--Sobic001G289800 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic003G166750--Sobic001G527800 Sobic001G457800 Sobic001G457800 Sobic003G166750--Sobic001G457800 Sobic003G186000--Sobic004G276400 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic003G186000--Sobic005G001000 Sobic003G186000--Sobic003G205200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic003G186000--Sobic007G103100 Sobic003G196300--Sobic010G206900 Sobic003G196300--Sobic004G034900 Sobic003G196300--Sobic001G194200 Sobic007G063000 Sobic007G063000 Sobic003G196300--Sobic007G063000 Sobic003G196300--Sobic001G289800 Sobic003G196300--Sobic004G276400 Sobic003G196300--Sobic010G247800 Sobic009G256300 Sobic009G256300 Sobic003G196300--Sobic009G256300 Sobic003G196300--Sobic001G534700 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic007G103100--Sobic001G527800 Sobic007G103100--Sobic003G205200 Sobic002G275700 Sobic002G275700 Sobic007G103100--Sobic002G275700 Sobic006G055200 Sobic006G055200 Sobic007G103100--Sobic006G055200 Sobic010G123600--Sobic010G010700 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic005G112300 Sobic005G112300 Sobic010G123600--Sobic005G112300 Sobic001G433800 Sobic001G433800 Sobic010G123600--Sobic001G433800 Sobic010G112100 Sobic010G112100 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic010G123600--Sobic008G001200
Octagon: transcription factors


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