Gene annotation
Transcriptome id Sobic.008G001200.3,Sobic.008G001200.2,Sobic.008G001200.1
Synonym Sb08g000280
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5R490 , A0A1B6PAW2
Pfam PF00076 PF14570
Panther DB PTHR12603 PTHR12603:SF3
NCBI CDD KOG2068; MOT2 transcription factor
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G45630 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os12g01190.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033262 , Zm00025a055288 , Zm00025a013232 , Zm00025a028910
Brachypodium KQJ92644 , KQJ92684
Barley HORVU5Hr1G048960.1 , HORVU5Hr1G048960.2 , HORVU5Hr1G048960.3 , HORVU5Hr1G048960.4 , HORVU5Hr1G048960.5 , HORVU5Hr1G048960.6 , HORVU5Hr1G048960.7 , HORVU5Hr1G048960.8 , HORVU5Hr1G048960.9 , HORVU5Hr1G048960.10
Wheat TraesCS5D02G161900 , TraesCS5D02G161900 , TraesCS5A02G156500 , TraesCS5B02G154700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
2 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
3 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
4 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
5 Sobic.010G010700 PHD-finger family protein, expressed -
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
8 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
9 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
10 Sobic.003G166750 - K15188: cyclin T
11 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
12 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
13 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
14 Sobic.003G388100 expressed protein -
15 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
16 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
17 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
18 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
19 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
20 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic008G001200 Sobic008G001200 Sobic003G155100 Sobic003G155100 Sobic008G001200--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G001200--Sobic010G206900 Sobic009G256400 Sobic009G256400 Sobic008G001200--Sobic009G256400 Sobic003G205200 Sobic003G205200 Sobic008G001200--Sobic003G205200 Sobic010G010700 Sobic010G010700 Sobic008G001200--Sobic010G010700 Sobic001G194200 Sobic001G194200 Sobic008G001200--Sobic001G194200 Sobic005G001000 Sobic005G001000 Sobic008G001200--Sobic005G001000 Sobic004G276400 Sobic004G276400 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic001G457800 Sobic001G457800 Sobic009G256400--Sobic001G457800 Sobic009G256400--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic009G256400--Sobic001G370900 Sobic009G256400--Sobic004G291900 Sobic009G256400--Sobic005G001000 Sobic003G166750 Sobic003G166750 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic009G256400--Sobic010G010700 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic003G205200--Sobic001G370900 Sobic003G186000 Sobic003G186000 Sobic003G205200--Sobic003G186000 Sobic010G139600 Sobic010G139600 Sobic003G205200--Sobic010G139600 Sobic003G205200--Sobic004G276400 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic005G001000--Sobic001G370900 Sobic005G001000--Sobic003G205200 Sobic005G001000--Sobic004G291900 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic003G422500 Sobic003G422500 Sobic005G001000--Sobic003G422500 Sobic005G001000--Sobic009G256400 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G242400 Sobic004G242400 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic004G174200--Sobic004G291900 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic004G174200--Sobic010G206900 Sobic004G174200--Sobic002G008900 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic004G174200--Sobic003G422500 Sobic004G174200--Sobic001G194200
Octagon: transcription factors


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