Gene annotation
Transcriptome id Sobic.003G196300.2,Sobic.003G196300.3
Synonym Sb03g025920
Functional annotation DNA binding protein, putative, expressed
UniProt A0A1W0VY35 , A0A1W0VY37
Pfam PF13921 PF07529
Panther DB PTHR10799 PTHR10799:SF698
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24870 : Helicase/SANT-associated, DNA binding protein
RAP-DB (Rice) LOC_Os08g08000.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a028477 , Zm00025a055735 , Zm00025a028484
Brachypodium KQK04577 , KQK08417 , KQK08418 , PNT72245 , PNT72244
Barley -
Wheat TraesCS1A02G439500 , TraesCS1A02G439500 , TraesCS3D02G211100 , TraesCS3D02G211100 , TraesCS3D02G211100 , TraesCS3B02G235600 , TraesCS3A02G208200 , TraesCS3A02G208200 , TraesCS1D02G448700 , TraesCS1B02G474800 , TraesCS1B02G474800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
2 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
3 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
4 Sobic.007G063000 expressed protein -
5 Sobic.001G289800 BAH domain containing protein, putative, expressed -
6 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
7 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
8 Sobic.009G256300 DNA binding protein, putative, expressed -
9 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
10 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
11 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
12 Sobic.003G166750 - K15188: cyclin T
13 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
15 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
16 Sobic.003G313500 MATH domain containing protein, expressed -
17 Sobic.001G457900 expressed protein -
18 Sobic.001G540400 expressed protein -
19 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
20 Sobic.003G422500 expressed protein -


Gene co-expression network
sample Sobic003G196300 Sobic003G196300 Sobic010G206900 Sobic010G206900 Sobic003G196300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic003G196300--Sobic004G034900 Sobic001G194200 Sobic001G194200 Sobic003G196300--Sobic001G194200 Sobic007G063000 Sobic007G063000 Sobic003G196300--Sobic007G063000 Sobic001G289800 Sobic001G289800 Sobic003G196300--Sobic001G289800 Sobic004G276400 Sobic004G276400 Sobic003G196300--Sobic004G276400 Sobic010G247800 Sobic010G247800 Sobic003G196300--Sobic010G247800 Sobic009G256300 Sobic009G256300 Sobic003G196300--Sobic009G256300 Sobic001G534700 Sobic001G534700 Sobic003G196300--Sobic001G534700 Sobic010G010700 Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic001G289600 Sobic001G289600 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic004G034900--Sobic001G540400 Sobic003G422500 Sobic003G422500 Sobic004G034900--Sobic003G422500 Sobic004G034900--Sobic004G276400 Sobic002G008900 Sobic002G008900 Sobic004G034900--Sobic002G008900 Sobic007G062800 Sobic007G062800 Sobic004G034900--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic001G433800 Sobic001G433800 Sobic007G063000--Sobic001G433800 Sobic007G063000--Sobic003G196300 Sobic003G360400 Sobic003G360400 Sobic007G063000--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic007G063000--Sobic009G109200 Sobic007G063000--Sobic009G165700 Sobic010G112100 Sobic010G112100 Sobic007G063000--Sobic010G112100 Sobic003G166750 Sobic003G166750 Sobic007G063000--Sobic003G166750 Sobic004G242400 Sobic004G242400 Sobic007G063000--Sobic004G242400 Sobic007G063000--Sobic009G256300 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000 Sobic003G186000 Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic010G247800--Sobic010G206900 Sobic010G247800--Sobic009G165700 Sobic010G247800--Sobic002G411600 Sobic010G247800--Sobic003G422500 Sobic009G191000 Sobic009G191000 Sobic010G247800--Sobic009G191000 Sobic010G247800--Sobic001G002000 Sobic001G363500 Sobic001G363500 Sobic010G247800--Sobic001G363500 Sobic010G247800--Sobic004G291900 Sobic002G405800 Sobic002G405800 Sobic010G247800--Sobic002G405800 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic001G534700--Sobic010G206900 Sobic001G534700--Sobic001G365900 Sobic001G534700--Sobic002G411600 Sobic003G316500 Sobic003G316500 Sobic001G534700--Sobic003G316500 Sobic001G534700--Sobic009G165700 Sobic001G534700--Sobic004G034900 Sobic001G534700--Sobic002G008900 Sobic001G534700--Sobic003G422500 Sobic001G534700--Sobic008G001200
Octagon: transcription factors


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