Gene annotation
Transcriptome id Sobic.007G063000.1,Sobic.007G063000.2
Synonym Sb07g005030
Functional annotation expressed protein
UniProt A0A1B6PFX8
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF729
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G50410 : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
RAP-DB (Rice) LOC_Os08g08220.2,LOC_Os08g08220.1 : EDA16, putative, expressed
MaizeGDB (Corn) Zm00025a046654 , Zm00025a013030 , Zm00025a029989 , Zm00025a057100
Brachypodium KQK18942 , KQJ95139
Barley HORVU7Hr1G067480.19 , HORVU7Hr1G067480.10 , HORVU7Hr1G067480.12 , HORVU7Hr1G067480.13 , HORVU7Hr1G067480.14 , HORVU7Hr1G067480.15 , HORVU7Hr1G067480.16 , HORVU7Hr1G067480.21 , HORVU7Hr1G067480.20 , HORVU7Hr1G067480.23 , HORVU7Hr1G067480.22 , HORVU7Hr1G067480.8 , HORVU7Hr1G067480.9 , HORVU7Hr1G067480.2 , HORVU7Hr1G067480.3 , HORVU7Hr1G067480.1 , HORVU7Hr1G067480.6 , HORVU7Hr1G067480.7 , HORVU7Hr1G067480.4 , HORVU7Hr1G067480.5
Wheat TraesCS7B02G198800 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
2 Sobic.003G196300 DNA binding protein, putative, expressed -
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
5 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
6 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
7 Sobic.003G166750 - K15188: cyclin T
8 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
9 Sobic.009G256300 DNA binding protein, putative, expressed -
10 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
12 Sobic.002G397500 SAC3/GANP family protein, expressed -
13 Sobic.002G154000 EDM2, putative, expressed -
14 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
15 Sobic.010G123600 WW domain containing protein, expressed -
16 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
17 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
20 Sobic.001G363500 DIRP family protein, putative, expressed -


Gene co-expression network
sample Sobic007G063000 Sobic007G063000 Sobic001G433800 Sobic001G433800 Sobic007G063000--Sobic001G433800 Sobic003G196300 Sobic003G196300 Sobic007G063000--Sobic003G196300 Sobic003G360400 Sobic003G360400 Sobic007G063000--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic007G063000--Sobic009G109200 Sobic009G165700 Sobic009G165700 Sobic007G063000--Sobic009G165700 Sobic010G112100 Sobic010G112100 Sobic007G063000--Sobic010G112100 Sobic003G166750 Sobic003G166750 Sobic007G063000--Sobic003G166750 Sobic004G242400 Sobic004G242400 Sobic007G063000--Sobic004G242400 Sobic009G256300 Sobic009G256300 Sobic007G063000--Sobic009G256300 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic010G206900 Sobic010G206900 Sobic003G196300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic003G196300--Sobic004G034900 Sobic001G194200 Sobic001G194200 Sobic003G196300--Sobic001G194200 Sobic003G196300--Sobic007G063000 Sobic001G289800 Sobic001G289800 Sobic003G196300--Sobic001G289800 Sobic004G276400 Sobic004G276400 Sobic003G196300--Sobic004G276400 Sobic010G247800 Sobic010G247800 Sobic003G196300--Sobic010G247800 Sobic003G196300--Sobic009G256300 Sobic001G534700 Sobic001G534700 Sobic003G196300--Sobic001G534700 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic003G422500 Sobic003G422500 Sobic009G165700--Sobic003G422500 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic003G166750--Sobic009G165700 Sobic003G166750--Sobic008G001200 Sobic009G256400 Sobic009G256400 Sobic003G166750--Sobic009G256400 Sobic001G370900 Sobic001G370900 Sobic003G166750--Sobic001G370900 Sobic003G166750--Sobic001G289800 Sobic002G316600 Sobic002G316600 Sobic003G166750--Sobic002G316600 Sobic003G166750--Sobic001G194200 Sobic001G527800 Sobic001G527800 Sobic003G166750--Sobic001G527800 Sobic001G457800 Sobic001G457800 Sobic003G166750--Sobic001G457800 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic009G256300--Sobic001G542400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.