Gene annotation
Transcriptome id Sobic.001G363500.3
Synonym ALY3, ATALY3, Sb01g034706
Functional annotation DIRP family protein, putative, expressed
UniProt A0A1B6QN22
Pfam PF00249 PF06584
Panther DB PTHR21689 PTHR21689:SF2
NCBI CDD KOG1019; Retinoblastoma pathway protein LIN-9/chromatin-associated protein Aly
KEGG Orthology -
Gene Ontology GO:0017053; transcription repressor complex GO:0007049cell cycle GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G21430 : DNA binding
RAP-DB (Rice) LOC_Os03g43800.2 : DIRP family protein, putative, expressed
MaizeGDB (Corn) Zm00025a057088
Brachypodium KQJ92880 , PNT65720 , PNT65718 , KQJ92878 , KQJ92879 , PNT65719 , PNT65717 , PNT65716 , KQJ92877
Barley HORVU5Hr1G000830.13 , HORVU5Hr1G000830.14 , HORVU5Hr1G000830.9 , HORVU5Hr1G000830.8 , HORVU5Hr1G000830.2 , HORVU5Hr1G000830.3 , HORVU5Hr1G000830.1 , HORVU5Hr1G000830.6 , HORVU5Hr1G000830.7 , HORVU5Hr1G000830.4 , HORVU5Hr1G000830.5 , HORVU5Hr1G000830.10 , HORVU5Hr1G000830.11 , HORVU5Hr1G000830.12 , HORVU5Hr1G000830.15 , HORVU5Hr1G000830.16 , HORVU5Hr1G000830.17
Wheat TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5A02G005500 , TraesCS5D02G007000 , TraesCS5D02G007000 , TraesCS5D02G007000 , TraesCS5D02G007000 , TraesCS5D02G007000 , TraesCS5D02G007000 , TraesCS5D02G007000 , TraesCS5B02G004400 , TraesCS5B02G004400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
2 Sobic.007G062800 SET domain containing protein, expressed -
3 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
4 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
5 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
6 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
7 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
8 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
9 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
10 Sobic.002G397500 SAC3/GANP family protein, expressed -
11 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
12 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
13 Sobic.001G241200 protein kinase domain containing protein, expressed -
14 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
17 Sobic.002G405800 PHD-finger family protein, expressed -
18 Sobic.006G252900 ubiquitin family protein, putative, expressed -
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4


Gene co-expression network
sample Sobic001G363500 Sobic001G363500 Sobic005G112300 Sobic005G112300 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic010G247800 Sobic010G247800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic010G279450 Sobic010G279450 Sobic001G363500--Sobic010G279450 Sobic010G139000 Sobic010G139000 Sobic001G363500--Sobic010G139000 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic010G206900 Sobic010G206900 Sobic010G247800--Sobic010G206900 Sobic009G165700 Sobic009G165700 Sobic010G247800--Sobic009G165700 Sobic002G411600 Sobic002G411600 Sobic010G247800--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic010G247800--Sobic003G422500 Sobic009G191000 Sobic009G191000 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic010G247800--Sobic001G363500 Sobic004G291900 Sobic004G291900 Sobic010G247800--Sobic004G291900 Sobic010G247800--Sobic002G405800 Sobic010G116600 Sobic010G116600 Sobic002G299700--Sobic010G116600 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G299700--Sobic002G397500 Sobic004G048800 Sobic004G048800 Sobic002G299700--Sobic004G048800 Sobic002G299700--Sobic004G242400 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic002G299700--Sobic007G062800 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic010G279450--Sobic002G405800 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic008G028700 Sobic008G028700 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G279450--Sobic010G247800 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800
Octagon: transcription factors


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