Gene annotation
Transcriptome id Sobic.003G441900.1
Synonym Sb03g047153
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1W0W1M3
Pfam -
Panther DB PTHR24006 PTHR24006:SF453
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36370 : ubiquitin-protein ligases
RAP-DB (Rice) LOC_Os01g73750.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a025850
Brachypodium KQK11724
Barley HORVU3Hr1G113720.17 , HORVU3Hr1G113720.15 , HORVU3Hr1G113720.14 , HORVU3Hr1G113720.13 , HORVU3Hr1G113720.12 , HORVU3Hr1G113720.10 , HORVU3Hr1G113720.38 , HORVU3Hr1G113720.39 , HORVU3Hr1G113720.33 , HORVU3Hr1G113720.32 , HORVU3Hr1G113720.35 , HORVU3Hr1G113720.37 , HORVU3Hr1G113720.28 , HORVU3Hr1G113720.29 , HORVU3Hr1G113720.27 , HORVU3Hr1G113720.24 , HORVU3Hr1G113720.25 , HORVU3Hr1G113720.22 , HORVU3Hr1G113720.21 , HORVU3Hr1G113720.8 , HORVU3Hr1G113720.7 , HORVU3Hr1G113720.6 , HORVU3Hr1G113720.5 , HORVU3Hr1G113720.2 , HORVU3Hr1G113720.41 , HORVU3Hr1G113720.42 , HORVU3Hr1G113720.44 , HORVU3Hr1G113720.46 , HORVU3Hr1G113720.47
Wheat TraesCSU02G059500 , TraesCSU02G059500 , TraesCSU02G059500 , TraesCSU02G173000 , TraesCS3A02G520000 , TraesCS3A02G520000 , TraesCS3B02G587700 , TraesCS3A02G520000 , TraesCS3A02G520000 , TraesCS3A02G520000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
2 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
3 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
4 Sobic.010G123600 WW domain containing protein, expressed -
5 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
6 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
7 Sobic.001G020000 metallo-beta-lactamase, putative, expressed K14402: CPSF2, cleavage and polyadenylation specificity factor subunit 2
8 Sobic.004G334300 ATMAK10, putative, expressed -
9 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
10 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
11 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
12 Sobic.009G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
14 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
15 Sobic.004G134200 GTP binding protein, putative, expressed -
16 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
17 Sobic.007G063000 expressed protein -
18 Sobic.001G111850 - -
19 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
20 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36


Gene co-expression network
sample Sobic003G441900 Sobic003G441900 Sobic005G167700 Sobic005G167700 Sobic003G441900--Sobic005G167700 Sobic001G433800 Sobic001G433800 Sobic003G441900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G441900--Sobic002G133300 Sobic010G123600 Sobic010G123600 Sobic003G441900--Sobic010G123600 Sobic001G151100 Sobic001G151100 Sobic003G441900--Sobic001G151100 Sobic004G276400 Sobic004G276400 Sobic003G441900--Sobic004G276400 Sobic001G020000 Sobic001G020000 Sobic003G441900--Sobic001G020000 Sobic004G334300 Sobic004G334300 Sobic003G441900--Sobic004G334300 Sobic001G194200 Sobic001G194200 Sobic003G441900--Sobic001G194200 Sobic005G167700--Sobic010G123600 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic003G168100 Sobic003G168100 Sobic005G167700--Sobic003G168100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic010G126000 Sobic010G126000 Sobic005G167700--Sobic010G126000 Sobic003G360400 Sobic003G360400 Sobic005G167700--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic010G010700 Sobic010G010700 Sobic010G123600--Sobic010G010700 Sobic009G256300 Sobic009G256300 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic010G123600--Sobic005G167700 Sobic010G123600--Sobic005G112300 Sobic010G123600--Sobic001G433800 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic008G001200 Sobic008G001200 Sobic010G123600--Sobic008G001200 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G151100--Sobic001G433800 Sobic001G151100--Sobic005G167700 Sobic001G087600 Sobic001G087600 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic003G186000 Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic010G105200 Sobic010G105200 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic007G062800 Sobic007G062800 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G219600 Sobic001G219600 Sobic001G020000--Sobic001G219600 Sobic001G020000--Sobic001G433800 Sobic002G317200 Sobic002G317200 Sobic001G020000--Sobic002G317200 Sobic001G354600 Sobic001G354600 Sobic001G020000--Sobic001G354600 Sobic001G020000--Sobic001G087600 Sobic002G425500 Sobic002G425500 Sobic001G020000--Sobic002G425500 Sobic003G095900 Sobic003G095900 Sobic001G020000--Sobic003G095900 Sobic001G352900 Sobic001G352900 Sobic001G020000--Sobic001G352900 Sobic004G124300 Sobic004G124300 Sobic001G020000--Sobic004G124300 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic004G334300--Sobic010G123600 Sobic004G334300--Sobic002G308700 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G334300--Sobic004G276400 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic001G194200--Sobic004G276400 Sobic001G194200--Sobic001G289800 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900
Octagon: transcription factors


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