Gene annotation
Transcriptome id Sobic.001G455600.6,Sobic.001G455600.7,Sobic.001G455600.2,Sobic.001G455600.1,Sobic.001G455600.3,Sobic.001G455600.4,Sobic.001G455600.5,Sobic.001G455600.8
Synonym Sb01g042800
Functional annotation cysteine synthase, putative, expressed
UniProt A0A1B6QPK9 , C5WSS1
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF35
NCBI CDD -
KEGG Orthology K01738; cysteine synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55880 : Pyridoxal-5\'-phosphate-dependent enzyme family protein
RAP-DB (Rice) LOC_Os03g11660.1 : cysteine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a001316
Brachypodium KQK22876 , KQK22877 , PNT77871 , PNT77870
Barley HORVU4Hr1G067610.4 , HORVU4Hr1G067610.5 , HORVU4Hr1G067610.6 , HORVU4Hr1G067610.7 , HORVU4Hr1G067610.1 , HORVU4Hr1G067610.2 , HORVU4Hr1G067610.3
Wheat TraesCS4A02G079100 , TraesCS4A02G079100 , TraesCS4D02G244300 , TraesCS4B02G245100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
2 Sobic.009G132700 - -
3 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
4 Sobic.004G134200 GTP binding protein, putative, expressed -
5 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
6 Sobic.006G216100 expressed protein -
7 Sobic.001G456900 expressed protein -
8 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
9 Sobic.008G044100 expressed protein -
10 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
11 Sobic.002G211800 AT-rich interaction region, putative, expressed -
12 Sobic.001G111850 - -
13 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
14 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
15 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
16 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
17 Sobic.002G425500 ATPOT1, putative, expressed -
18 Sobic.010G123600 WW domain containing protein, expressed -
19 Sobic.006G096900 expressed protein -
20 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G455600 Sobic001G455600 Sobic004G140600 Sobic004G140600 Sobic001G455600--Sobic004G140600 Sobic009G132700 Sobic009G132700 Sobic001G455600--Sobic009G132700 Sobic009G185700 Sobic009G185700 Sobic001G455600--Sobic009G185700 Sobic004G134200 Sobic004G134200 Sobic001G455600--Sobic004G134200 Sobic010G139000 Sobic010G139000 Sobic001G455600--Sobic010G139000 Sobic006G216100 Sobic006G216100 Sobic001G455600--Sobic006G216100 Sobic001G456900 Sobic001G456900 Sobic001G455600--Sobic001G456900 Sobic003G441900 Sobic003G441900 Sobic001G455600--Sobic003G441900 Sobic008G044100 Sobic008G044100 Sobic001G455600--Sobic008G044100 Sobic001G227200 Sobic001G227200 Sobic004G140600--Sobic001G227200 Sobic009G177500 Sobic009G177500 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic004G140600--Sobic009G132700 Sobic004G140600--Sobic001G455600 Sobic004G140600--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic004G140600--Sobic002G343901 Sobic001G219600 Sobic001G219600 Sobic004G140600--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic004G140600--Sobic001G433800 Sobic005G027400 Sobic005G027400 Sobic009G132700--Sobic005G027400 Sobic009G132700--Sobic004G140600 Sobic003G170900 Sobic003G170900 Sobic009G132700--Sobic003G170900 Sobic009G132700--Sobic001G455600 Sobic002G211800 Sobic002G211800 Sobic009G132700--Sobic002G211800 Sobic006G252900 Sobic006G252900 Sobic009G132700--Sobic006G252900 Sobic009G132700--Sobic001G433800 Sobic001G111850 Sobic001G111850 Sobic009G132700--Sobic001G111850 Sobic003G188400 Sobic003G188400 Sobic009G132700--Sobic003G188400 Sobic009G185700--Sobic001G455600 Sobic002G344000 Sobic002G344000 Sobic009G185700--Sobic002G344000 Sobic009G185700--Sobic004G134200 Sobic002G425500 Sobic002G425500 Sobic009G185700--Sobic002G425500 Sobic009G185700--Sobic003G441900 Sobic005G142800 Sobic005G142800 Sobic009G185700--Sobic005G142800 Sobic009G185700--Sobic002G211800 Sobic003G077700 Sobic003G077700 Sobic009G185700--Sobic003G077700 Sobic009G215500 Sobic009G215500 Sobic009G185700--Sobic009G215500 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic004G034800 Sobic004G034800 Sobic006G216100--Sobic004G034800 Sobic002G042800 Sobic002G042800 Sobic006G216100--Sobic002G042800 Sobic003G168100 Sobic003G168100 Sobic006G216100--Sobic003G168100 Sobic006G216100--Sobic001G455600 Sobic006G216100--Sobic006G252900 Sobic006G216100--Sobic009G132700 Sobic007G031900 Sobic007G031900 Sobic006G216100--Sobic007G031900 Sobic003G398700 Sobic003G398700 Sobic006G216100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic006G216100--Sobic004G244900 Sobic001G456900--Sobic001G036050 Sobic001G456900--Sobic010G139000 Sobic004G258700 Sobic004G258700 Sobic001G456900--Sobic004G258700 Sobic008G113100 Sobic008G113100 Sobic001G456900--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G456900--Sobic001G311500 Sobic001G456900--Sobic003G398700 Sobic003G101500 Sobic003G101500 Sobic001G456900--Sobic003G101500 Sobic005G167700 Sobic005G167700 Sobic003G441900--Sobic005G167700 Sobic003G441900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G441900--Sobic002G133300 Sobic010G123600 Sobic010G123600 Sobic003G441900--Sobic010G123600 Sobic001G151100 Sobic001G151100 Sobic003G441900--Sobic001G151100 Sobic003G441900--Sobic004G276400 Sobic001G020000 Sobic001G020000 Sobic003G441900--Sobic001G020000 Sobic004G334300 Sobic004G334300 Sobic003G441900--Sobic004G334300 Sobic003G441900--Sobic001G194200 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic008G044100--Sobic001G374100 Sobic003G155100 Sobic003G155100 Sobic008G044100--Sobic003G155100 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600
Octagon: transcription factors


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