Gene annotation
Transcriptome id Sobic.009G185700.4,Sobic.009G185700.1,Sobic.009G185700.3,Sobic.009G185700.2
Synonym MSH5, ATMSH5, Sb09g024520
Functional annotation mutS domain V family protein, expressed
UniProt A0A1Z5R3E2 , A0A1Z5R3Z5 , A0A1Z5R384 , A0A1Z5R3D0
Pfam PF05192 PF00488
Panther DB PTHR11361 PTHR11361:SF20
NCBI CDD -
KEGG Orthology K08741; DNA mismatch repair protein MSH5
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G20475 : MUTS-homologue 5
RAP-DB (Rice) LOC_Os05g41880.1 : mutS domain V family protein, expressed
MaizeGDB (Corn) Zm00025a037874 , Zm00025a037869
Brachypodium PNT66567 , PNT66566 , PNT66565 , PNT66564 , PNT66563 , PNT66569 , PNT66568
Barley HORVU1Hr1G066830.20 , HORVU1Hr1G066830.24 , HORVU1Hr1G066830.58 , HORVU1Hr1G066830.59 , HORVU1Hr1G066830.27 , HORVU1Hr1G066830.51 , HORVU1Hr1G066830.52 , HORVU1Hr1G066830.53 , HORVU1Hr1G066830.54 , HORVU1Hr1G066830.55 , HORVU1Hr1G066830.56 , HORVU1Hr1G066830.57 , HORVU1Hr1G066830.60 , HORVU1Hr1G066830.14 , HORVU1Hr1G066830.15 , HORVU1Hr1G066830.17 , HORVU1Hr1G066830.10 , HORVU1Hr1G066830.12 , HORVU1Hr1G066830.13 , HORVU1Hr1G066830.18 , HORVU1Hr1G066830.19 , HORVU1Hr1G066830.16 , HORVU1Hr1G066830.8 , HORVU1Hr1G066830.9 , HORVU1Hr1G066830.6 , HORVU1Hr1G066830.7 , HORVU1Hr1G066830.4 , HORVU1Hr1G066830.5 , HORVU1Hr1G066830.2 , HORVU1Hr1G066830.3 , HORVU1Hr1G066830.1 , HORVU1Hr1G066830.29 , HORVU1Hr1G066830.28 , HORVU1Hr1G066830.21 , HORVU1Hr1G066830.23 , HORVU1Hr1G066830.22 , HORVU1Hr1G066830.25 , HORVU1Hr1G066830.26 , HORVU1Hr1G066830.38 , HORVU1Hr1G066830.39 , HORVU1Hr1G066830.34 , HORVU1Hr1G066830.30 , HORVU1Hr1G066830.35 , HORVU1Hr1G066830.49 , HORVU1Hr1G066830.48 , HORVU1Hr1G066830.43 , HORVU1Hr1G066830.42 , HORVU1Hr1G066830.41 , HORVU1Hr1G066830.40 , HORVU1Hr1G066830.47 , HORVU1Hr1G066830.46 , HORVU1Hr1G066830.45 , HORVU1Hr1G066830.44 , HORVU1Hr1G066830.37 , HORVU1Hr1G066830.32 , HORVU1Hr1G066830.33 , HORVU1Hr1G066830.31
Wheat TraesCS1A02G315900 , TraesCS1B02G328200 , TraesCS1D02G316200
Populus PNT12510


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
2 Sobic.002G344000 expressed protein -
3 Sobic.004G134200 GTP binding protein, putative, expressed -
4 Sobic.002G425500 ATPOT1, putative, expressed -
5 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
6 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
7 Sobic.002G211800 AT-rich interaction region, putative, expressed -
8 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
9 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
10 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
11 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
12 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
13 Sobic.008G054000 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
14 Sobic.003G294300 S4 domain containing protein, putative, expressed -
15 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
16 Sobic.003G253600 protein kinase domain containing protein, expressed -
17 Sobic.001G172700 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
18 Sobic.008G044100 expressed protein -
19 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
20 Sobic.003G433200 BAS1, putative, expressed -


Gene co-expression network
sample Sobic009G185700 Sobic009G185700 Sobic001G455600 Sobic001G455600 Sobic009G185700--Sobic001G455600 Sobic002G344000 Sobic002G344000 Sobic009G185700--Sobic002G344000 Sobic004G134200 Sobic004G134200 Sobic009G185700--Sobic004G134200 Sobic002G425500 Sobic002G425500 Sobic009G185700--Sobic002G425500 Sobic003G441900 Sobic003G441900 Sobic009G185700--Sobic003G441900 Sobic005G142800 Sobic005G142800 Sobic009G185700--Sobic005G142800 Sobic002G211800 Sobic002G211800 Sobic009G185700--Sobic002G211800 Sobic003G077700 Sobic003G077700 Sobic009G185700--Sobic003G077700 Sobic009G215500 Sobic009G215500 Sobic009G185700--Sobic009G215500 Sobic004G140600 Sobic004G140600 Sobic001G455600--Sobic004G140600 Sobic009G132700 Sobic009G132700 Sobic001G455600--Sobic009G132700 Sobic001G455600--Sobic009G185700 Sobic001G455600--Sobic004G134200 Sobic010G139000 Sobic010G139000 Sobic001G455600--Sobic010G139000 Sobic006G216100 Sobic006G216100 Sobic001G455600--Sobic006G216100 Sobic001G456900 Sobic001G456900 Sobic001G455600--Sobic001G456900 Sobic001G455600--Sobic003G441900 Sobic008G044100 Sobic008G044100 Sobic001G455600--Sobic008G044100 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic002G344000--Sobic008G044100 Sobic003G360400 Sobic003G360400 Sobic002G344000--Sobic003G360400 Sobic002G344000--Sobic002G211800 Sobic001G230000 Sobic001G230000 Sobic002G344000--Sobic001G230000 Sobic008G113100 Sobic008G113100 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic001G354600 Sobic001G354600 Sobic002G344000--Sobic001G354600 Sobic010G206900 Sobic010G206900 Sobic002G344000--Sobic010G206900 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic004G107200 Sobic004G107200 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic005G167700 Sobic005G167700 Sobic003G441900--Sobic005G167700 Sobic001G433800 Sobic001G433800 Sobic003G441900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G441900--Sobic002G133300 Sobic010G123600 Sobic010G123600 Sobic003G441900--Sobic010G123600 Sobic001G151100 Sobic001G151100 Sobic003G441900--Sobic001G151100 Sobic003G441900--Sobic004G276400 Sobic003G441900--Sobic001G020000 Sobic004G334300 Sobic004G334300 Sobic003G441900--Sobic004G334300 Sobic003G441900--Sobic001G194200 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic002G418600 Sobic002G418600 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic004G337400 Sobic004G337400 Sobic003G077700--Sobic004G337400 Sobic001G516901 Sobic001G516901 Sobic003G077700--Sobic001G516901 Sobic005G231100 Sobic005G231100 Sobic003G077700--Sobic005G231100 Sobic005G084500 Sobic005G084500 Sobic003G077700--Sobic005G084500 Sobic001G378100 Sobic001G378100 Sobic003G077700--Sobic001G378100 Sobic003G233700 Sobic003G233700 Sobic003G077700--Sobic003G233700 Sobic001G500600 Sobic001G500600 Sobic003G077700--Sobic001G500600 Sobic002G347600 Sobic002G347600 Sobic003G077700--Sobic002G347600 Sobic003G301300 Sobic003G301300 Sobic003G077700--Sobic003G301300 Sobic001G530900 Sobic001G530900 Sobic009G215500--Sobic001G530900 Sobic009G215500--Sobic008G044100 Sobic009G215500--Sobic004G134200 Sobic003G155100 Sobic003G155100 Sobic009G215500--Sobic003G155100 Sobic006G031800 Sobic006G031800 Sobic009G215500--Sobic006G031800 Sobic006G219600 Sobic006G219600 Sobic009G215500--Sobic006G219600 Sobic001G133000 Sobic001G133000 Sobic009G215500--Sobic001G133000 Sobic001G465700 Sobic001G465700 Sobic009G215500--Sobic001G465700 Sobic006G050700 Sobic006G050700 Sobic009G215500--Sobic006G050700
Octagon: transcription factors


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