Gene annotation
Transcriptome id Sobic.003G294300.1
Synonym Sb03g034470
Functional annotation S4 domain containing protein, putative, expressed
UniProt C5XK23
Pfam PF01479
Panther DB PTHR32219 PTHR32219:SF3
NCBI CDD KOG4837; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT1G53120 : RNA-binding S4 domain-containing protein
RAP-DB (Rice) LOC_Os01g54390.1 : S4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027560
Brachypodium PNT72847 , PNT72846 , KQK09715
Barley HORVU3Hr1G071300.36 , HORVU3Hr1G071300.37 , HORVU3Hr1G071300.34 , HORVU3Hr1G071300.35 , HORVU3Hr1G071300.32 , HORVU3Hr1G071300.33 , HORVU3Hr1G071300.30 , HORVU3Hr1G071300.31 , HORVU3Hr1G071300.38 , HORVU3Hr1G071300.39 , HORVU3Hr1G071300.18 , HORVU3Hr1G071300.19 , HORVU3Hr1G071300.14 , HORVU3Hr1G071300.15 , HORVU3Hr1G071300.16 , HORVU3Hr1G071300.17 , HORVU3Hr1G071300.10 , HORVU3Hr1G071300.11 , HORVU3Hr1G071300.12 , HORVU3Hr1G071300.13 , HORVU3Hr1G071300.21 , HORVU3Hr1G071300.20 , HORVU3Hr1G071300.22 , HORVU3Hr1G071300.25 , HORVU3Hr1G071300.24 , HORVU3Hr1G071300.27 , HORVU3Hr1G071300.26 , HORVU3Hr1G071300.29 , HORVU3Hr1G071300.28 , HORVU3Hr1G071300.6 , HORVU3Hr1G071300.7 , HORVU3Hr1G071300.5 , HORVU3Hr1G071300.2 , HORVU3Hr1G071300.3 , HORVU3Hr1G071300.1 , HORVU3Hr1G071300.8 , HORVU3Hr1G071300.9 , HORVU3Hr1G071300.43 , HORVU3Hr1G071300.42 , HORVU3Hr1G071300.41 , HORVU3Hr1G071300.40 , HORVU3Hr1G071300.44
Wheat TraesCS3A02G273700 , TraesCS3D02G273000 , TraesCS3B02G307400 , TraesCS3B02G307400 , TraesCS3B02G307400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G211800 AT-rich interaction region, putative, expressed -
2 Sobic.002G344000 expressed protein -
3 Sobic.003G222900 OsFtsH9 FtsH protease, homologue of AtFtsH11, expressed K08955: ATP-dependent metalloprotease
4 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
5 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
6 Sobic.003G170900 - -
7 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
8 Sobic.003G176000 lipase family protein, putative, expressed -
9 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
10 Sobic.003G217700 - -
11 Sobic.009G185700 mutS domain V family protein, expressed K08741: DNA mismatch repair protein MSH5
12 Sobic.001G043100 EMB1745, putative, expressed K18723: nucleoporin GLE1
13 Sobic.003G241100 expressed protein K07765: S2P endopeptidase
14 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
15 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
16 Sobic.003G077700 DUF647 domain containing protein, putative, expressed -
17 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
18 Sobic.003G435200 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
19 Sobic.003G247500 expressed protein -
20 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic003G294300 Sobic003G294300 Sobic002G211800 Sobic002G211800 Sobic003G294300--Sobic002G211800 Sobic002G344000 Sobic002G344000 Sobic003G294300--Sobic002G344000 Sobic003G222900 Sobic003G222900 Sobic003G294300--Sobic003G222900 Sobic001G455600 Sobic001G455600 Sobic003G294300--Sobic001G455600 Sobic006G050700 Sobic006G050700 Sobic003G294300--Sobic006G050700 Sobic003G170900 Sobic003G170900 Sobic003G294300--Sobic003G170900 Sobic004G131800 Sobic004G131800 Sobic003G294300--Sobic004G131800 Sobic003G176000 Sobic003G176000 Sobic003G294300--Sobic003G176000 Sobic002G325300 Sobic002G325300 Sobic003G294300--Sobic002G325300 Sobic009G165700 Sobic009G165700 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic009G132700 Sobic009G132700 Sobic002G211800--Sobic009G132700 Sobic002G211800--Sobic003G170900 Sobic002G294800 Sobic002G294800 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600 Sobic005G100700 Sobic005G100700 Sobic002G344000--Sobic005G100700 Sobic008G044100 Sobic008G044100 Sobic002G344000--Sobic008G044100 Sobic003G360400 Sobic003G360400 Sobic002G344000--Sobic003G360400 Sobic002G344000--Sobic002G211800 Sobic001G230000 Sobic001G230000 Sobic002G344000--Sobic001G230000 Sobic008G113100 Sobic008G113100 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic001G354600 Sobic001G354600 Sobic002G344000--Sobic001G354600 Sobic010G206900 Sobic010G206900 Sobic002G344000--Sobic010G206900 Sobic003G229300 Sobic003G229300 Sobic003G222900--Sobic003G229300 Sobic010G176550 Sobic010G176550 Sobic003G222900--Sobic010G176550 Sobic003G217700 Sobic003G217700 Sobic003G222900--Sobic003G217700 Sobic003G017100 Sobic003G017100 Sobic003G222900--Sobic003G017100 Sobic002G252800 Sobic002G252800 Sobic003G222900--Sobic002G252800 Sobic001G198100 Sobic001G198100 Sobic003G222900--Sobic001G198100 Sobic010G032900 Sobic010G032900 Sobic003G222900--Sobic010G032900 Sobic007G023200 Sobic007G023200 Sobic003G222900--Sobic007G023200 Sobic009G209300 Sobic009G209300 Sobic003G222900--Sobic009G209300 Sobic004G140600 Sobic004G140600 Sobic001G455600--Sobic004G140600 Sobic001G455600--Sobic009G132700 Sobic009G185700 Sobic009G185700 Sobic001G455600--Sobic009G185700 Sobic004G134200 Sobic004G134200 Sobic001G455600--Sobic004G134200 Sobic010G139000 Sobic010G139000 Sobic001G455600--Sobic010G139000 Sobic006G216100 Sobic006G216100 Sobic001G455600--Sobic006G216100 Sobic001G456900 Sobic001G456900 Sobic001G455600--Sobic001G456900 Sobic003G441900 Sobic003G441900 Sobic001G455600--Sobic003G441900 Sobic001G455600--Sobic008G044100 Sobic003G155100 Sobic003G155100 Sobic006G050700--Sobic003G155100 Sobic006G219600 Sobic006G219600 Sobic006G050700--Sobic006G219600 Sobic008G001200 Sobic008G001200 Sobic006G050700--Sobic008G001200 Sobic009G201300 Sobic009G201300 Sobic006G050700--Sobic009G201300 Sobic002G346200 Sobic002G346200 Sobic006G050700--Sobic002G346200 Sobic004G042200 Sobic004G042200 Sobic006G050700--Sobic004G042200 Sobic006G050700--Sobic010G206900 Sobic006G050700--Sobic001G230000 Sobic001G527800 Sobic001G527800 Sobic006G050700--Sobic001G527800 Sobic003G170900--Sobic009G165700 Sobic010G123600 Sobic010G123600 Sobic003G170900--Sobic010G123600 Sobic005G112300 Sobic005G112300 Sobic003G170900--Sobic005G112300 Sobic003G170900--Sobic010G206900 Sobic003G170900--Sobic010G139000 Sobic003G422500 Sobic003G422500 Sobic003G170900--Sobic003G422500 Sobic003G170900--Sobic003G166750 Sobic010G247800 Sobic010G247800 Sobic003G170900--Sobic010G247800 Sobic001G194200 Sobic001G194200 Sobic003G170900--Sobic001G194200 Sobic004G131800--Sobic003G176000 Sobic004G131800--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic004G131800--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic004G131800--Sobic006G127600 Sobic004G131800--Sobic010G032900 Sobic004G131800--Sobic002G344000 Sobic006G056700 Sobic006G056700 Sobic004G131800--Sobic006G056700 Sobic001G178300 Sobic001G178300 Sobic004G131800--Sobic001G178300 Sobic004G131800--Sobic002G294800 Sobic003G176000--Sobic004G131800 Sobic003G176000--Sobic002G344000 Sobic003G176000--Sobic002G211800 Sobic003G176000--Sobic002G170200 Sobic003G176000--Sobic010G032900 Sobic003G253600 Sobic003G253600 Sobic003G176000--Sobic003G253600 Sobic003G176000--Sobic002G325300 Sobic003G176000--Sobic002G294800 Sobic005G059800 Sobic005G059800 Sobic003G176000--Sobic005G059800 Sobic006G185100 Sobic006G185100 Sobic002G325300--Sobic006G185100 Sobic002G325300--Sobic001G194200 Sobic006G252900 Sobic006G252900 Sobic002G325300--Sobic006G252900 Sobic003G247500 Sobic003G247500 Sobic002G325300--Sobic003G247500 Sobic003G119600 Sobic003G119600 Sobic002G325300--Sobic003G119600 Sobic006G041600 Sobic006G041600 Sobic002G325300--Sobic006G041600 Sobic002G325300--Sobic008G001200 Sobic004G244900 Sobic004G244900 Sobic002G325300--Sobic004G244900 Sobic009G256400 Sobic009G256400 Sobic002G325300--Sobic009G256400
Octagon: transcription factors


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