Gene annotation
Transcriptome id Sobic.003G222900.1
Synonym Sb03g028120, FTSH11
Functional annotation OsFtsH9 FtsH protease, homologue of AtFtsH11, expressed
UniProt A0A1B6Q4S1
Pfam PF07728 PF01434
Panther DB PTHR23076 PTHR23076:SF40
NCBI CDD -
KEGG Orthology K08955; ATP-dependent metalloprotease
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0006508proteolysis GO:0004222metalloendopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G53170 : FTSH protease 11
RAP-DB (Rice) LOC_Os01g43150.1 : OsFtsH9 FtsH protease, homologue of AtFtsH11, expressed
MaizeGDB (Corn) Zm00025a038547 , Zm00025a028392
Brachypodium KQK08758
Barley -
Wheat TraesCS3B02G252900 , TraesCS3D02G230100 , TraesCS3A02G222300
Populus PNT08656 , PNT08655 , PNS99975 , PNS99976


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cDNA sequences
Sobic.003G222900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
2 Sobic.010G176550 - -
3 Sobic.003G217700 - -
4 Sobic.003G017100 ABC transporter, ATP-binding protein, putative, expressed -
5 Sobic.002G252800 OsFBX332 - F-box domain containing protein, expressed -
6 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
7 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
8 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -
9 Sobic.009G209300 starch synthase, putative, expressed -
10 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
11 Sobic.003G294300 S4 domain containing protein, putative, expressed -
12 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
13 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
14 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
15 Sobic.005G084800 expressed protein -
16 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
17 Sobic.010G149200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
18 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
19 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -
20 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1


Gene co-expression network
sample Sobic003G222900 Sobic003G222900 Sobic003G229300 Sobic003G229300 Sobic003G222900--Sobic003G229300 Sobic010G176550 Sobic010G176550 Sobic003G222900--Sobic010G176550 Sobic003G217700 Sobic003G217700 Sobic003G222900--Sobic003G217700 Sobic003G017100 Sobic003G017100 Sobic003G222900--Sobic003G017100 Sobic002G252800 Sobic002G252800 Sobic003G222900--Sobic002G252800 Sobic001G198100 Sobic001G198100 Sobic003G222900--Sobic001G198100 Sobic010G032900 Sobic010G032900 Sobic003G222900--Sobic010G032900 Sobic007G023200 Sobic007G023200 Sobic003G222900--Sobic007G023200 Sobic009G209300 Sobic009G209300 Sobic003G222900--Sobic009G209300 Sobic003G191700 Sobic003G191700 Sobic003G229300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G229300--Sobic010G176200 Sobic006G133900 Sobic006G133900 Sobic003G229300--Sobic006G133900 Sobic004G042200 Sobic004G042200 Sobic003G229300--Sobic004G042200 Sobic001G169900 Sobic001G169900 Sobic003G229300--Sobic001G169900 Sobic008G115900 Sobic008G115900 Sobic003G229300--Sobic008G115900 Sobic007G198300 Sobic007G198300 Sobic003G229300--Sobic007G198300 Sobic003G262200 Sobic003G262200 Sobic003G229300--Sobic003G262200 Sobic003G229300--Sobic003G222900 Sobic002G031400 Sobic002G031400 Sobic010G176550--Sobic002G031400 Sobic004G034800 Sobic004G034800 Sobic010G176550--Sobic004G034800 Sobic001G261573 Sobic001G261573 Sobic010G176550--Sobic001G261573 Sobic010G176550--Sobic003G217700 Sobic007G185700 Sobic007G185700 Sobic010G176550--Sobic007G185700 Sobic001G035900 Sobic001G035900 Sobic010G176550--Sobic001G035900 Sobic003G234900 Sobic003G234900 Sobic010G176550--Sobic003G234900 Sobic010G005600 Sobic010G005600 Sobic010G176550--Sobic010G005600 Sobic010G176550--Sobic010G032900 Sobic003G217700--Sobic007G185700 Sobic003G217700--Sobic010G176550 Sobic003G217700--Sobic007G023200 Sobic001G530900 Sobic001G530900 Sobic003G217700--Sobic001G530900 Sobic005G084500 Sobic005G084500 Sobic003G217700--Sobic005G084500 Sobic003G217700--Sobic004G042200 Sobic008G001900 Sobic008G001900 Sobic003G217700--Sobic008G001900 Sobic003G217700--Sobic001G198100 Sobic004G238200 Sobic004G238200 Sobic003G217700--Sobic004G238200 Sobic002G006600 Sobic002G006600 Sobic003G017100--Sobic002G006600 Sobic010G002700 Sobic010G002700 Sobic003G017100--Sobic010G002700 Sobic003G017100--Sobic001G198100 Sobic003G276300 Sobic003G276300 Sobic003G017100--Sobic003G276300 Sobic003G017100--Sobic001G169900 Sobic003G313300 Sobic003G313300 Sobic003G017100--Sobic003G313300 Sobic001G468700 Sobic001G468700 Sobic003G017100--Sobic001G468700 Sobic003G247400 Sobic003G247400 Sobic003G017100--Sobic003G247400 Sobic003G017100--Sobic003G191700 Sobic001G389100 Sobic001G389100 Sobic002G252800--Sobic001G389100 Sobic002G104100 Sobic002G104100 Sobic002G252800--Sobic002G104100 Sobic002G252800--Sobic003G229300 Sobic002G252800--Sobic003G222900 Sobic003G029700 Sobic003G029700 Sobic002G252800--Sobic003G029700 Sobic006G105400 Sobic006G105400 Sobic002G252800--Sobic006G105400 Sobic001G365900 Sobic001G365900 Sobic002G252800--Sobic001G365900 Sobic002G133400 Sobic002G133400 Sobic002G252800--Sobic002G133400 Sobic006G048600 Sobic006G048600 Sobic002G252800--Sobic006G048600 Sobic001G198100--Sobic003G017100 Sobic001G198100--Sobic003G247400 Sobic001G198100--Sobic001G169900 Sobic001G198100--Sobic010G002700 Sobic001G198100--Sobic002G006600 Sobic010G043800 Sobic010G043800 Sobic001G198100--Sobic010G043800 Sobic009G121000 Sobic009G121000 Sobic001G198100--Sobic009G121000 Sobic001G198100--Sobic003G276300 Sobic006G142600 Sobic006G142600 Sobic001G198100--Sobic006G142600 Sobic005G059800 Sobic005G059800 Sobic010G032900--Sobic005G059800 Sobic010G139000 Sobic010G139000 Sobic010G032900--Sobic010G139000 Sobic003G170900 Sobic003G170900 Sobic010G032900--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic010G032900--Sobic001G194200 Sobic001G002000 Sobic001G002000 Sobic010G032900--Sobic001G002000 Sobic003G011300 Sobic003G011300 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic002G294800 Sobic002G294800 Sobic010G032900--Sobic002G294800 Sobic002G134200 Sobic002G134200 Sobic010G032900--Sobic002G134200 Sobic007G023200--Sobic004G238200 Sobic007G023200--Sobic003G217700 Sobic004G163800 Sobic004G163800 Sobic007G023200--Sobic004G163800 Sobic007G023200--Sobic003G234900 Sobic002G168300 Sobic002G168300 Sobic007G023200--Sobic002G168300 Sobic007G023200--Sobic005G059800 Sobic007G023200--Sobic007G185700 Sobic008G062400 Sobic008G062400 Sobic007G023200--Sobic008G062400 Sobic007G023200--Sobic010G176550 Sobic003G332800 Sobic003G332800 Sobic009G209300--Sobic003G332800 Sobic006G216800 Sobic006G216800 Sobic009G209300--Sobic006G216800 Sobic003G429650 Sobic003G429650 Sobic009G209300--Sobic003G429650 Sobic006G182900 Sobic006G182900 Sobic009G209300--Sobic006G182900 Sobic006G048500 Sobic006G048500 Sobic009G209300--Sobic006G048500 Sobic007G116200 Sobic007G116200 Sobic009G209300--Sobic007G116200 Sobic009G209300--Sobic002G006600 Sobic003G148000 Sobic003G148000 Sobic009G209300--Sobic003G148000 Sobic001G036050 Sobic001G036050 Sobic009G209300--Sobic001G036050
Octagon: transcription factors


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