Gene annotation
Transcriptome id Sobic.003G017100.2,Sobic.003G017100.1
Synonym Sb03g001690
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1W0VVE4 , A0A1B6Q0V5
Pfam PF00005 PF05992 PF05992 PF00005
Panther DB PTHR11384 PTHR11384:SF3
NCBI CDD KOG0060; Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis)
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity GO:0016021integral component of membrane GO:0006810transport GO:0005215transporter activity GO:0016887ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G54350 : ABC transporter family protein
RAP-DB (Rice) LOC_Os01g11946.1,LOC_Os01g11946.2 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a035926
Brachypodium KQK03317
Barley HORVU3Hr1G027580.31 , HORVU3Hr1G027580.30 , HORVU3Hr1G027580.33 , HORVU3Hr1G027580.32 , HORVU3Hr1G027580.35 , HORVU3Hr1G027580.34 , HORVU3Hr1G027580.26 , HORVU3Hr1G027580.27 , HORVU3Hr1G027580.24 , HORVU3Hr1G027580.25 , HORVU3Hr1G027580.22 , HORVU3Hr1G027580.23 , HORVU3Hr1G027580.28 , HORVU3Hr1G027580.29 , HORVU3Hr1G027580.14 , HORVU3Hr1G027580.13 , HORVU3Hr1G027580.11
Wheat TraesCS3D02G144400 , TraesCS3D02G144400 , TraesCS3A02G143200 , TraesCS3A02G143200 , TraesCS3B02G161900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
2 Sobic.010G002700 expressed protein -
3 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
4 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
5 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
6 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
7 Sobic.001G468700 expressed protein -
8 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
9 Sobic.003G191700 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
10 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
11 Sobic.005G118400 expressed protein -
12 Sobic.003G057233 - -
13 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
14 Sobic.001G530900 expressed protein -
15 Sobic.009G209300 starch synthase, putative, expressed -
16 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
17 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit
18 Sobic.009G121000 expressed protein -
19 Sobic.006G133900 NIN, putative, expressed -
20 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -


Gene co-expression network
sample Sobic003G017100 Sobic003G017100 Sobic002G006600 Sobic002G006600 Sobic003G017100--Sobic002G006600 Sobic010G002700 Sobic010G002700 Sobic003G017100--Sobic010G002700 Sobic001G198100 Sobic001G198100 Sobic003G017100--Sobic001G198100 Sobic003G276300 Sobic003G276300 Sobic003G017100--Sobic003G276300 Sobic001G169900 Sobic001G169900 Sobic003G017100--Sobic001G169900 Sobic003G313300 Sobic003G313300 Sobic003G017100--Sobic003G313300 Sobic001G468700 Sobic001G468700 Sobic003G017100--Sobic001G468700 Sobic003G247400 Sobic003G247400 Sobic003G017100--Sobic003G247400 Sobic003G191700 Sobic003G191700 Sobic003G017100--Sobic003G191700 Sobic002G006600--Sobic003G017100 Sobic002G006600--Sobic001G198100 Sobic002G006600--Sobic010G002700 Sobic002G006600--Sobic001G169900 Sobic003G429650 Sobic003G429650 Sobic002G006600--Sobic003G429650 Sobic004G164400 Sobic004G164400 Sobic002G006600--Sobic004G164400 Sobic006G182900 Sobic006G182900 Sobic002G006600--Sobic006G182900 Sobic009G209300 Sobic009G209300 Sobic002G006600--Sobic009G209300 Sobic006G105400 Sobic006G105400 Sobic002G006600--Sobic006G105400 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G043800 Sobic010G043800 Sobic010G002700--Sobic010G043800 Sobic001G378100 Sobic001G378100 Sobic010G002700--Sobic001G378100 Sobic007G136200 Sobic007G136200 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic001G198100--Sobic003G017100 Sobic001G198100--Sobic003G247400 Sobic001G198100--Sobic001G169900 Sobic001G198100--Sobic010G002700 Sobic001G198100--Sobic002G006600 Sobic001G198100--Sobic010G043800 Sobic009G121000 Sobic009G121000 Sobic001G198100--Sobic009G121000 Sobic001G198100--Sobic003G276300 Sobic006G142600 Sobic006G142600 Sobic001G198100--Sobic006G142600 Sobic003G276300--Sobic010G002700 Sobic001G017300 Sobic001G017300 Sobic003G276300--Sobic001G017300 Sobic003G276300--Sobic003G017100 Sobic003G276300--Sobic003G247400 Sobic003G276300--Sobic006G142600 Sobic003G276300--Sobic001G169900 Sobic003G276300--Sobic010G043800 Sobic003G276300--Sobic001G198100 Sobic003G276300--Sobic007G136200 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic003G313300--Sobic003G017100 Sobic003G313300--Sobic003G191700 Sobic010G176200 Sobic010G176200 Sobic003G313300--Sobic010G176200 Sobic007G047400 Sobic007G047400 Sobic003G313300--Sobic007G047400 Sobic004G028500 Sobic004G028500 Sobic003G313300--Sobic004G028500 Sobic003G313300--Sobic001G017300 Sobic003G313300--Sobic001G468700 Sobic003G313300--Sobic010G002700 Sobic005G206300 Sobic005G206300 Sobic003G313300--Sobic005G206300 Sobic001G468700--Sobic010G002700 Sobic001G468700--Sobic003G017100 Sobic001G468700--Sobic004G028500 Sobic001G468700--Sobic001G017300 Sobic001G468700--Sobic009G121000 Sobic001G468700--Sobic003G247400 Sobic001G468700--Sobic003G313300 Sobic001G468700--Sobic003G276300 Sobic003G004200 Sobic003G004200 Sobic001G468700--Sobic003G004200 Sobic003G247400--Sobic001G198100 Sobic003G247400--Sobic003G276300 Sobic003G247400--Sobic009G121000 Sobic003G247400--Sobic010G043800 Sobic003G247400--Sobic010G002700 Sobic003G247400--Sobic003G017100 Sobic007G185700 Sobic007G185700 Sobic003G247400--Sobic007G185700 Sobic003G247400--Sobic007G136200 Sobic003G247400--Sobic001G468700 Sobic004G042200 Sobic004G042200 Sobic003G191700--Sobic004G042200 Sobic003G191700--Sobic003G313300 Sobic006G133900 Sobic006G133900 Sobic003G191700--Sobic006G133900 Sobic003G229300 Sobic003G229300 Sobic003G191700--Sobic003G229300 Sobic003G191700--Sobic003G017100 Sobic009G038900 Sobic009G038900 Sobic003G191700--Sobic009G038900 Sobic007G198300 Sobic007G198300 Sobic003G191700--Sobic007G198300 Sobic003G155100 Sobic003G155100 Sobic003G191700--Sobic003G155100 Sobic003G191700--Sobic010G002700
Octagon: transcription factors


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