Gene annotation
Transcriptome id Sobic.010G043800.1
Synonym Sb10g003860
Functional annotation uncharacterized protein ycf45, putative, expressed
UniProt C5Z4D7
Pfam PF00004
Panther DB PTHR20953 PTHR20953:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G73170 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os06g06190.1 : uncharacterized protein ycf45, putative, expressed
MaizeGDB (Corn) Zm00025a041570
Brachypodium PNT76513 , PNT76512
Barley HORVU7Hr1G024210.8 , HORVU7Hr1G024210.9 , HORVU7Hr1G024210.2 , HORVU7Hr1G024210.3 , HORVU7Hr1G024210.1 , HORVU7Hr1G024210.6 , HORVU7Hr1G024210.7 , HORVU7Hr1G024210.4 , HORVU7Hr1G024210.5 , HORVU7Hr1G024210.10
Wheat TraesCS7D02G108200 , TraesCS7A02G112800 , TraesCS7B02G010500 , TraesCS7B02G010500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G121000 expressed protein -
2 Sobic.007G136200 expressed protein -
3 Sobic.001G504400 expressed protein -
4 Sobic.006G142600 lipase class 3 family protein, putative, expressed -
5 Sobic.010G002700 expressed protein -
6 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
7 Sobic.007G103400 expressed protein -
8 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
9 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
10 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
11 Sobic.007G058001 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
12 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
13 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
14 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
15 Sobic.003G398800 expressed protein -
16 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
17 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
18 Sobic.001G048400 pheophorbide a oxygenase, chloroplast precursor, putative, expressed -
19 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
20 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial


Gene co-expression network
sample Sobic010G043800 Sobic010G043800 Sobic009G121000 Sobic009G121000 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic001G504400 Sobic001G504400 Sobic010G043800--Sobic001G504400 Sobic006G142600 Sobic006G142600 Sobic010G043800--Sobic006G142600 Sobic010G002700 Sobic010G002700 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic007G103400 Sobic007G103400 Sobic010G043800--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100 Sobic009G121000--Sobic010G043800 Sobic005G063000 Sobic005G063000 Sobic009G121000--Sobic005G063000 Sobic003G247400 Sobic003G247400 Sobic009G121000--Sobic003G247400 Sobic001G198100 Sobic001G198100 Sobic009G121000--Sobic001G198100 Sobic009G121000--Sobic006G142600 Sobic003G160800 Sobic003G160800 Sobic009G121000--Sobic003G160800 Sobic003G276300 Sobic003G276300 Sobic009G121000--Sobic003G276300 Sobic009G121000--Sobic007G103400 Sobic009G121000--Sobic010G002700 Sobic007G136200--Sobic006G158100 Sobic007G136200--Sobic010G043800 Sobic007G136200--Sobic001G504400 Sobic007G136200--Sobic010G002700 Sobic007G136200--Sobic007G103400 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic007G136200--Sobic001G378100 Sobic002G206300 Sobic002G206300 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G258200 Sobic001G258200 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G180200 Sobic001G180200 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic006G142600--Sobic010G043800 Sobic003G306200 Sobic003G306200 Sobic006G142600--Sobic003G306200 Sobic006G142600--Sobic007G103400 Sobic006G142600--Sobic007G108900 Sobic006G142600--Sobic007G136200 Sobic006G142600--Sobic001G169900 Sobic006G142600--Sobic006G158100 Sobic002G198300 Sobic002G198300 Sobic006G142600--Sobic002G198300 Sobic003G094100 Sobic003G094100 Sobic006G142600--Sobic003G094100 Sobic003G017100 Sobic003G017100 Sobic010G002700--Sobic003G017100 Sobic010G002700--Sobic001G169900 Sobic005G118400 Sobic005G118400 Sobic010G002700--Sobic005G118400 Sobic010G002700--Sobic010G043800 Sobic010G002700--Sobic001G378100 Sobic010G002700--Sobic007G136200 Sobic010G002700--Sobic003G276300 Sobic010G002700--Sobic001G198100 Sobic001G530900 Sobic001G530900 Sobic010G002700--Sobic001G530900 Sobic006G158100--Sobic007G136200 Sobic001G017300 Sobic001G017300 Sobic006G158100--Sobic001G017300 Sobic006G158100--Sobic001G258200 Sobic006G158100--Sobic001G504400 Sobic006G158100--Sobic003G094100 Sobic006G158100--Sobic010G043800 Sobic010G067100 Sobic010G067100 Sobic006G158100--Sobic010G067100 Sobic006G158100--Sobic001G169900 Sobic006G158100--Sobic003G185900 Sobic009G237000 Sobic009G237000 Sobic007G103400--Sobic009G237000 Sobic002G298800 Sobic002G298800 Sobic007G103400--Sobic002G298800 Sobic004G353100 Sobic004G353100 Sobic007G103400--Sobic004G353100 Sobic010G035400 Sobic010G035400 Sobic007G103400--Sobic010G035400 Sobic007G103400--Sobic001G504400 Sobic007G103400--Sobic003G306200 Sobic007G103400--Sobic002G198300 Sobic003G233700 Sobic003G233700 Sobic007G103400--Sobic003G233700 Sobic002G275300 Sobic002G275300 Sobic007G103400--Sobic002G275300 Sobic001G169900--Sobic010G002700 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G378100--Sobic001G504400 Sobic001G077300 Sobic001G077300 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G536700 Sobic001G536700 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200
Octagon: transcription factors


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