Gene annotation
Transcriptome id Sobic.007G058001.1
Synonym -
Functional annotation -
UniProt A0A1Z5R884
Pfam PF02475
Panther DB PTHR23245 PTHR23245:SF35
NCBI CDD -
KEGG Orthology K15429; TRM5, tRNA (guanine37-N1)-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27340 : Met-10+ like family protein
RAP-DB (Rice) LOC_Os01g29409.1 : tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a024687
Brachypodium PNT70528 , PNT70529 , PNT70527 , KQK04401 , KQK04402
Barley HORVU3Hr1G030270.10 , HORVU3Hr1G030270.5 , HORVU3Hr1G030270.4 , HORVU3Hr1G030270.3 , HORVU3Hr1G030270.2 , HORVU3Hr1G030270.9 , HORVU3Hr1G030270.8
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
2 Sobic.002G005600 Aldolase-type TIM barrel family protein(PubMedID : 26465154)@SOR/SNZ family protein, putative, expressed K06215: pdxS, pyridoxal 5'-phosphate synthase pdxS subunit
3 Sobic.001G504400 expressed protein -
4 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
5 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
6 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
7 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
8 Sobic.003G003450 - K01177: beta-amylase
9 Sobic.009G207900 expressed protein -
10 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G327000 bZIP transcription factor domain containing protein, expressed -
13 Sobic.009G073900 thioredoxin, putative, expressed -
14 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
15 Sobic.002G028400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
17 Sobic.006G212800 expressed protein -
18 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
19 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
20 Sobic.001G077300 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic007G058001 Sobic007G058001 Sobic010G043800 Sobic010G043800 Sobic007G058001--Sobic010G043800 Sobic002G005600 Sobic002G005600 Sobic007G058001--Sobic002G005600 Sobic001G504400 Sobic001G504400 Sobic007G058001--Sobic001G504400 Sobic003G345500 Sobic003G345500 Sobic007G058001--Sobic003G345500 Sobic006G232600 Sobic006G232600 Sobic007G058001--Sobic006G232600 Sobic007G135800 Sobic007G135800 Sobic007G058001--Sobic007G135800 Sobic001G217900 Sobic001G217900 Sobic007G058001--Sobic001G217900 Sobic003G003450 Sobic003G003450 Sobic007G058001--Sobic003G003450 Sobic009G207900 Sobic009G207900 Sobic007G058001--Sobic009G207900 Sobic009G121000 Sobic009G121000 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic010G043800--Sobic001G504400 Sobic006G142600 Sobic006G142600 Sobic010G043800--Sobic006G142600 Sobic010G002700 Sobic010G002700 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic007G103400 Sobic007G103400 Sobic010G043800--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100 Sobic002G005600--Sobic009G207900 Sobic002G206300 Sobic002G206300 Sobic002G005600--Sobic002G206300 Sobic001G180200 Sobic001G180200 Sobic002G005600--Sobic001G180200 Sobic006G212800 Sobic006G212800 Sobic002G005600--Sobic006G212800 Sobic002G005600--Sobic001G504400 Sobic002G005600--Sobic007G058001 Sobic001G054000 Sobic001G054000 Sobic002G005600--Sobic001G054000 Sobic001G540600 Sobic001G540600 Sobic002G005600--Sobic001G540600 Sobic002G005600--Sobic003G345500 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G258200 Sobic001G258200 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic009G062400 Sobic009G062400 Sobic003G345500--Sobic009G062400 Sobic003G345500--Sobic001G504400 Sobic008G006100 Sobic008G006100 Sobic003G345500--Sobic008G006100 Sobic003G345500--Sobic009G207900 Sobic003G345500--Sobic007G103400 Sobic003G345500--Sobic007G058001 Sobic006G102000 Sobic006G102000 Sobic003G345500--Sobic006G102000 Sobic003G345500--Sobic002G005600 Sobic009G237000 Sobic009G237000 Sobic003G345500--Sobic009G237000 Sobic009G170200 Sobic009G170200 Sobic006G232600--Sobic009G170200 Sobic007G087100 Sobic007G087100 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic006G232600--Sobic001G378100 Sobic009G073900 Sobic009G073900 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic009G103000 Sobic009G103000 Sobic006G232600--Sobic009G103000 Sobic001G077300 Sobic001G077300 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic001G509200 Sobic001G509200 Sobic007G135800--Sobic001G509200 Sobic003G094100 Sobic003G094100 Sobic007G135800--Sobic003G094100 Sobic001G393300 Sobic001G393300 Sobic007G135800--Sobic001G393300 Sobic007G135800--Sobic001G180200 Sobic004G103300 Sobic004G103300 Sobic007G135800--Sobic004G103300 Sobic006G213700 Sobic006G213700 Sobic007G135800--Sobic006G213700 Sobic007G166300 Sobic007G166300 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic007G058100 Sobic007G058100 Sobic001G217900--Sobic007G058100 Sobic010G231300 Sobic010G231300 Sobic001G217900--Sobic010G231300 Sobic008G129900 Sobic008G129900 Sobic001G217900--Sobic008G129900 Sobic001G217900--Sobic001G378100 Sobic001G217900--Sobic001G258200 Sobic001G217900--Sobic002G206300 Sobic001G263100 Sobic001G263100 Sobic001G217900--Sobic001G263100 Sobic001G217900--Sobic008G033000 Sobic001G217900--Sobic001G540600 Sobic003G003450--Sobic009G073900 Sobic003G003450--Sobic001G077300 Sobic003G003450--Sobic001G509200 Sobic003G003450--Sobic006G213700 Sobic003G003450--Sobic002G081400 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic009G207900--Sobic001G504400 Sobic009G219100 Sobic009G219100 Sobic009G207900--Sobic009G219100 Sobic009G207900--Sobic007G135800 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G207900--Sobic009G062400
Octagon: transcription factors


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