Gene annotation
Transcriptome id Sobic.002G005600.1
Synonym ATPDX1.3, PDX1, Sb02g000720, ATPDX1, RSR4, PDX1.3
Functional annotation Aldolase-type TIM barrel family protein (PubMedID : 26465154)
SOR/SNZ family protein, putative, expressed
UniProt A0A1W0W1P7
Pfam PF01680
Panther DB PTHR31829
NCBI CDD -
KEGG Orthology K06215; pdxS, pyridoxal 5'-phosphate synthase pdxS subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01410 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os07g01020.1 : SOR/SNZ family protein, putative, expressed
MaizeGDB (Corn) Zm00025a044863 , Zm00025a016258
Brachypodium KQK21272 , KQK23513
Barley HORVU2Hr1G065120.2 , HORVU2Hr1G065120.1 , HORVU4Hr1G027040.6 , HORVU4Hr1G027040.1 , HORVU4Hr1G027040.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G005600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207900 expressed protein -
2 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
3 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
4 Sobic.006G212800 expressed protein -
5 Sobic.001G504400 expressed protein -
6 Sobic.007G058001 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
7 Sobic.001G054000 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
8 Sobic.001G540600 expressed protein -
9 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -
10 Sobic.001G217900 PPR repeat domain containing protein, putative, expressed -
11 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
12 Sobic.009G038701 - -
13 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
15 Sobic.001G536700 expressed protein -
16 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
17 Sobic.009G103000 ubiquitin family protein, putative, expressed -
18 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.010G231300 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
20 Sobic.003G037300 Twin LOV 1, putative, expressed -


Gene co-expression network
sample Sobic002G005600 Sobic002G005600 Sobic009G207900 Sobic009G207900 Sobic002G005600--Sobic009G207900 Sobic002G206300 Sobic002G206300 Sobic002G005600--Sobic002G206300 Sobic001G180200 Sobic001G180200 Sobic002G005600--Sobic001G180200 Sobic006G212800 Sobic006G212800 Sobic002G005600--Sobic006G212800 Sobic001G504400 Sobic001G504400 Sobic002G005600--Sobic001G504400 Sobic007G058001 Sobic007G058001 Sobic002G005600--Sobic007G058001 Sobic001G054000 Sobic001G054000 Sobic002G005600--Sobic001G054000 Sobic001G540600 Sobic001G540600 Sobic002G005600--Sobic001G540600 Sobic003G345500 Sobic003G345500 Sobic002G005600--Sobic003G345500 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic009G207900--Sobic001G504400 Sobic009G219100 Sobic009G219100 Sobic009G207900--Sobic009G219100 Sobic007G135800 Sobic007G135800 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic003G073800 Sobic003G073800 Sobic009G207900--Sobic003G073800 Sobic009G062400 Sobic009G062400 Sobic009G207900--Sobic009G062400 Sobic002G206300--Sobic009G038701 Sobic002G206300--Sobic001G504400 Sobic002G206300--Sobic001G180200 Sobic001G536700 Sobic001G536700 Sobic002G206300--Sobic001G536700 Sobic002G206300--Sobic009G207900 Sobic001G258200 Sobic001G258200 Sobic002G206300--Sobic001G258200 Sobic008G129900 Sobic008G129900 Sobic002G206300--Sobic008G129900 Sobic001G217900 Sobic001G217900 Sobic002G206300--Sobic001G217900 Sobic003G341300 Sobic003G341300 Sobic002G206300--Sobic003G341300 Sobic001G180200--Sobic003G341300 Sobic001G180200--Sobic002G206300 Sobic001G180200--Sobic007G135800 Sobic001G180200--Sobic009G038701 Sobic001G180200--Sobic009G207900 Sobic003G094100 Sobic003G094100 Sobic001G180200--Sobic003G094100 Sobic001G180200--Sobic001G504400 Sobic001G263100 Sobic001G263100 Sobic001G180200--Sobic001G263100 Sobic002G162400 Sobic002G162400 Sobic001G180200--Sobic002G162400 Sobic006G212800--Sobic009G207900 Sobic001G077300 Sobic001G077300 Sobic006G212800--Sobic001G077300 Sobic006G212800--Sobic001G180200 Sobic006G212800--Sobic007G135800 Sobic006G212800--Sobic002G206300 Sobic009G073900 Sobic009G073900 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic006G212800--Sobic002G162400 Sobic001G504400--Sobic002G206300 Sobic007G103400 Sobic007G103400 Sobic001G504400--Sobic007G103400 Sobic001G504400--Sobic009G038701 Sobic003G185900 Sobic003G185900 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic008G033000 Sobic008G033000 Sobic001G504400--Sobic008G033000 Sobic001G504400--Sobic001G180200 Sobic001G378100 Sobic001G378100 Sobic001G504400--Sobic001G378100 Sobic010G043800 Sobic010G043800 Sobic007G058001--Sobic010G043800 Sobic007G058001--Sobic002G005600 Sobic007G058001--Sobic001G504400 Sobic007G058001--Sobic003G345500 Sobic006G232600 Sobic006G232600 Sobic007G058001--Sobic006G232600 Sobic007G058001--Sobic007G135800 Sobic007G058001--Sobic001G217900 Sobic003G003450 Sobic003G003450 Sobic007G058001--Sobic003G003450 Sobic007G058001--Sobic009G207900 Sobic001G054000--Sobic002G005600 Sobic001G054000--Sobic003G003450 Sobic003G220100 Sobic003G220100 Sobic001G054000--Sobic003G220100 Sobic001G054000--Sobic001G540600 Sobic001G054000--Sobic010G043800 Sobic001G169900 Sobic001G169900 Sobic001G054000--Sobic001G169900 Sobic009G103000 Sobic009G103000 Sobic001G054000--Sobic009G103000 Sobic001G394800 Sobic001G394800 Sobic001G054000--Sobic001G394800 Sobic001G054000--Sobic009G207900 Sobic001G540600--Sobic001G378100 Sobic001G540600--Sobic001G217900 Sobic001G540600--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic001G540600--Sobic009G170200 Sobic001G540600--Sobic002G206300 Sobic010G231300 Sobic010G231300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic001G540600--Sobic009G207900 Sobic001G540600--Sobic003G073800 Sobic003G345500--Sobic009G062400 Sobic003G345500--Sobic001G504400 Sobic008G006100 Sobic008G006100 Sobic003G345500--Sobic008G006100 Sobic003G345500--Sobic009G207900 Sobic003G345500--Sobic007G103400 Sobic003G345500--Sobic007G058001 Sobic006G102000 Sobic006G102000 Sobic003G345500--Sobic006G102000 Sobic003G345500--Sobic002G005600 Sobic009G237000 Sobic009G237000 Sobic003G345500--Sobic009G237000
Octagon: transcription factors


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