Gene annotation
Transcriptome id Sobic.001G054000.1
Synonym Sb01g004950, PHF1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WX41
Pfam -
Panther DB PTHR23284 PTHR23284:SF3
NCBI CDD KOG0771; Prolactin regulatory element-binding protein/Protein transport protein SEC12p
KEGG Orthology K14003; PREB, prolactin regulatory element-binding protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52190 : phosphate transporter traffic facilitator1
RAP-DB (Rice) LOC_Os07g09000.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008595
Brachypodium KQK20513
Barley HORVU7Hr1G103510.9 , HORVU7Hr1G103510.5 , HORVU7Hr1G103510.4 , HORVU7Hr1G103510.7 , HORVU7Hr1G103510.6 , HORVU7Hr1G103510.3 , HORVU7Hr1G103510.2 , HORVU7Hr1G103510.11 , HORVU7Hr1G103510.10 , HORVU7Hr1G103510.12 , HORVU5Hr1G106990.4 , HORVU5Hr1G106990.5 , HORVU5Hr1G106990.2 , HORVU5Hr1G106990.3 , HORVU7Hr1G103510.1
Wheat TraesCS7B02G354500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G005600 Aldolase-type TIM barrel family protein(PubMedID : 26465154)@SOR/SNZ family protein, putative, expressed K06215: pdxS, pyridoxal 5'-phosphate synthase pdxS subunit
2 Sobic.003G003450 - K01177: beta-amylase
3 Sobic.003G220100 - -
4 Sobic.001G540600 expressed protein -
5 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
6 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
7 Sobic.009G103000 ubiquitin family protein, putative, expressed -
8 Sobic.001G394800 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.009G207900 expressed protein -
10 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
11 Sobic.001G077300 thioredoxin, putative, expressed -
12 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
13 Sobic.010G002700 expressed protein -
14 Sobic.007G058001 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
15 Sobic.002G206300 tsi1-interacting protein TSIP1, putative, expressed -
16 Sobic.003G073800 phosphatidate cytidylyltransferase, putative, expressed K00981: E2.7.7.41, CDS1, CDS2, phosphatidate cytidylyltransferase
17 Sobic.007G136200 expressed protein -
18 Sobic.001G504400 expressed protein -
19 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
20 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G054000 Sobic001G054000 Sobic002G005600 Sobic002G005600 Sobic001G054000--Sobic002G005600 Sobic003G003450 Sobic003G003450 Sobic001G054000--Sobic003G003450 Sobic003G220100 Sobic003G220100 Sobic001G054000--Sobic003G220100 Sobic001G540600 Sobic001G540600 Sobic001G054000--Sobic001G540600 Sobic010G043800 Sobic010G043800 Sobic001G054000--Sobic010G043800 Sobic001G169900 Sobic001G169900 Sobic001G054000--Sobic001G169900 Sobic009G103000 Sobic009G103000 Sobic001G054000--Sobic009G103000 Sobic001G394800 Sobic001G394800 Sobic001G054000--Sobic001G394800 Sobic009G207900 Sobic009G207900 Sobic001G054000--Sobic009G207900 Sobic002G005600--Sobic009G207900 Sobic002G206300 Sobic002G206300 Sobic002G005600--Sobic002G206300 Sobic001G180200 Sobic001G180200 Sobic002G005600--Sobic001G180200 Sobic006G212800 Sobic006G212800 Sobic002G005600--Sobic006G212800 Sobic001G504400 Sobic001G504400 Sobic002G005600--Sobic001G504400 Sobic007G058001 Sobic007G058001 Sobic002G005600--Sobic007G058001 Sobic002G005600--Sobic001G054000 Sobic002G005600--Sobic001G540600 Sobic003G345500 Sobic003G345500 Sobic002G005600--Sobic003G345500 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic005G106600 Sobic005G106600 Sobic003G220100--Sobic005G106600 Sobic001G333800 Sobic001G333800 Sobic003G220100--Sobic001G333800 Sobic004G312600 Sobic004G312600 Sobic003G220100--Sobic004G312600 Sobic007G058100 Sobic007G058100 Sobic003G220100--Sobic007G058100 Sobic009G038900 Sobic009G038900 Sobic003G220100--Sobic009G038900 Sobic001G378100 Sobic001G378100 Sobic003G220100--Sobic001G378100 Sobic003G220100--Sobic001G169900 Sobic003G073800 Sobic003G073800 Sobic003G220100--Sobic003G073800 Sobic010G002700 Sobic010G002700 Sobic003G220100--Sobic010G002700 Sobic001G540600--Sobic001G378100 Sobic001G217900 Sobic001G217900 Sobic001G540600--Sobic001G217900 Sobic001G540600--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic001G540600--Sobic009G170200 Sobic001G540600--Sobic002G206300 Sobic010G231300 Sobic010G231300 Sobic001G540600--Sobic010G231300 Sobic004G179400 Sobic004G179400 Sobic001G540600--Sobic004G179400 Sobic001G540600--Sobic009G207900 Sobic001G540600--Sobic003G073800 Sobic009G121000 Sobic009G121000 Sobic010G043800--Sobic009G121000 Sobic007G136200 Sobic007G136200 Sobic010G043800--Sobic007G136200 Sobic010G043800--Sobic001G504400 Sobic006G142600 Sobic006G142600 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic010G043800--Sobic006G158100 Sobic007G103400 Sobic007G103400 Sobic010G043800--Sobic007G103400 Sobic010G043800--Sobic001G169900 Sobic010G043800--Sobic001G378100 Sobic001G169900--Sobic010G002700 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G198100 Sobic001G198100 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic001G169900--Sobic003G017100 Sobic009G103000--Sobic007G087100 Sobic009G103000--Sobic001G077300 Sobic009G103000--Sobic009G170200 Sobic009G103000--Sobic009G073900 Sobic009G103000--Sobic003G003450 Sobic009G103000--Sobic006G232600 Sobic009G103000--Sobic006G213700 Sobic009G103000--Sobic001G378100 Sobic009G103000--Sobic006G212800 Sobic002G138100 Sobic002G138100 Sobic001G394800--Sobic002G138100 Sobic001G394800--Sobic001G169900 Sobic001G394800--Sobic003G003450 Sobic003G057233 Sobic003G057233 Sobic001G394800--Sobic003G057233 Sobic007G010800 Sobic007G010800 Sobic001G394800--Sobic007G010800 Sobic001G283100 Sobic001G283100 Sobic001G394800--Sobic001G283100 Sobic004G035900 Sobic004G035900 Sobic001G394800--Sobic004G035900 Sobic001G394800--Sobic001G054000 Sobic007G227100 Sobic007G227100 Sobic001G394800--Sobic007G227100 Sobic009G207900--Sobic006G212800 Sobic009G207900--Sobic001G180200 Sobic009G207900--Sobic002G206300 Sobic009G207900--Sobic001G504400 Sobic009G219100 Sobic009G219100 Sobic009G207900--Sobic009G219100 Sobic007G135800 Sobic007G135800 Sobic009G207900--Sobic007G135800 Sobic009G038701 Sobic009G038701 Sobic009G207900--Sobic009G038701 Sobic009G207900--Sobic003G073800 Sobic009G062400 Sobic009G062400 Sobic009G207900--Sobic009G062400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.