Gene annotation
Transcriptome id Sobic.001G394800.1,Sobic.001G394800.2,Sobic.001G394800.3
Synonym HCF107
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1Z5S9U0 , A0A1Z5S9V8 , A0A1Z5SA45
Pfam PF13176 PF07719 PF05182 PF07719 PF07719
Panther DB PTHR11246 PTHR11246:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17040 : high chlorophyll fluorescent 107
RAP-DB (Rice) LOC_Os03g19560.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002158 , Zm00025a002157
Brachypodium PNT77532
Barley HORVU4Hr1G053530.2 , HORVU4Hr1G053530.3 , HORVU4Hr1G053530.1 , HORVU4Hr1G053530.6 , HORVU4Hr1G053530.7 , HORVU4Hr1G053530.4 , HORVU4Hr1G053530.5
Wheat TraesCS4A02G122200 , TraesCS4A02G122200 , TraesCS4D02G183700 , TraesCS4D02G183600 , TraesCS4D02G183600 , TraesCS4B02G182100 , TraesCS4B02G182100 , TraesCS4A02G122200
Populus PNT16522 , PNT16523 , PNT16520 , PNT16521 , PNT16519 , PNT16518


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cDNA sequences
Sobic.001G394800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G138100 ACT domain containing protein, expressed -
2 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
3 Sobic.003G003450 - K01177: beta-amylase
4 Sobic.003G057233 - -
5 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
6 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
7 Sobic.004G035900 expressed protein -
8 Sobic.001G054000 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
9 Sobic.007G227100 expressed protein -
10 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
11 Sobic.003G276300 zinc knuckle domain containing protein, expressed -
12 Sobic.001G077300 thioredoxin, putative, expressed -
13 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
14 Sobic.001G207800 integral membrane protein, putative, expressed -
15 Sobic.009G073900 thioredoxin, putative, expressed -
16 Sobic.003G220100 - -
17 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
18 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
19 Sobic.006G142600 lipase class 3 family protein, putative, expressed -
20 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G394800 Sobic001G394800 Sobic002G138100 Sobic002G138100 Sobic001G394800--Sobic002G138100 Sobic001G169900 Sobic001G169900 Sobic001G394800--Sobic001G169900 Sobic003G003450 Sobic003G003450 Sobic001G394800--Sobic003G003450 Sobic003G057233 Sobic003G057233 Sobic001G394800--Sobic003G057233 Sobic007G010800 Sobic007G010800 Sobic001G394800--Sobic007G010800 Sobic001G283100 Sobic001G283100 Sobic001G394800--Sobic001G283100 Sobic004G035900 Sobic004G035900 Sobic001G394800--Sobic004G035900 Sobic001G054000 Sobic001G054000 Sobic001G394800--Sobic001G054000 Sobic007G227100 Sobic007G227100 Sobic001G394800--Sobic007G227100 Sobic002G138100--Sobic001G394800 Sobic002G138100--Sobic007G010800 Sobic009G040400 Sobic009G040400 Sobic002G138100--Sobic009G040400 Sobic009G228100 Sobic009G228100 Sobic002G138100--Sobic009G228100 Sobic002G138100--Sobic001G169900 Sobic003G103300 Sobic003G103300 Sobic002G138100--Sobic003G103300 Sobic002G138100--Sobic003G003450 Sobic002G138100--Sobic003G057233 Sobic002G356900 Sobic002G356900 Sobic002G138100--Sobic002G356900 Sobic010G002700 Sobic010G002700 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic001G169900--Sobic010G043800 Sobic007G136200 Sobic007G136200 Sobic001G169900--Sobic007G136200 Sobic001G198100 Sobic001G198100 Sobic001G169900--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic001G169900--Sobic006G142600 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic001G169900--Sobic003G017100 Sobic009G073900 Sobic009G073900 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic001G509200 Sobic001G509200 Sobic003G003450--Sobic001G509200 Sobic006G213700 Sobic006G213700 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic006G090100 Sobic006G090100 Sobic003G003450--Sobic006G090100 Sobic007G087100 Sobic007G087100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic003G057233--Sobic001G394800 Sobic003G057233--Sobic001G169900 Sobic003G057233--Sobic001G198100 Sobic003G057233--Sobic003G017100 Sobic004G258700 Sobic004G258700 Sobic003G057233--Sobic004G258700 Sobic010G248700 Sobic010G248700 Sobic003G057233--Sobic010G248700 Sobic010G132600 Sobic010G132600 Sobic003G057233--Sobic010G132600 Sobic003G057233--Sobic010G002700 Sobic006G219150 Sobic006G219150 Sobic003G057233--Sobic006G219150 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic010G100900 Sobic010G100900 Sobic007G010800--Sobic010G100900 Sobic007G010800--Sobic009G040400 Sobic002G351200 Sobic002G351200 Sobic007G010800--Sobic002G351200 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic003G186800 Sobic003G186800 Sobic007G010800--Sobic003G186800 Sobic001G283100--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G283100--Sobic003G094100 Sobic001G283100--Sobic001G207800 Sobic003G341300 Sobic003G341300 Sobic001G283100--Sobic003G341300 Sobic007G108900 Sobic007G108900 Sobic001G283100--Sobic007G108900 Sobic001G393300 Sobic001G393300 Sobic001G283100--Sobic001G393300 Sobic007G157300 Sobic007G157300 Sobic001G283100--Sobic007G157300 Sobic001G283100--Sobic001G509200 Sobic002G382700 Sobic002G382700 Sobic001G283100--Sobic002G382700 Sobic003G005000 Sobic003G005000 Sobic004G035900--Sobic003G005000 Sobic004G035900--Sobic001G283100 Sobic001G485100 Sobic001G485100 Sobic004G035900--Sobic001G485100 Sobic004G035900--Sobic003G003450 Sobic001G331600 Sobic001G331600 Sobic004G035900--Sobic001G331600 Sobic004G035900--Sobic007G157300 Sobic008G149100 Sobic008G149100 Sobic004G035900--Sobic008G149100 Sobic001G015200 Sobic001G015200 Sobic004G035900--Sobic001G015200 Sobic003G228300 Sobic003G228300 Sobic004G035900--Sobic003G228300 Sobic002G005600 Sobic002G005600 Sobic001G054000--Sobic002G005600 Sobic001G054000--Sobic003G003450 Sobic003G220100 Sobic003G220100 Sobic001G054000--Sobic003G220100 Sobic001G540600 Sobic001G540600 Sobic001G054000--Sobic001G540600 Sobic001G054000--Sobic010G043800 Sobic001G054000--Sobic001G169900 Sobic009G103000 Sobic009G103000 Sobic001G054000--Sobic009G103000 Sobic001G054000--Sobic001G394800 Sobic009G207900 Sobic009G207900 Sobic001G054000--Sobic009G207900 Sobic004G312600 Sobic004G312600 Sobic007G227100--Sobic004G312600 Sobic004G127800 Sobic004G127800 Sobic007G227100--Sobic004G127800 Sobic007G227100--Sobic001G077300 Sobic007G227100--Sobic001G331600 Sobic008G038500 Sobic008G038500 Sobic007G227100--Sobic008G038500 Sobic007G227100--Sobic002G382700 Sobic006G235400 Sobic006G235400 Sobic007G227100--Sobic006G235400 Sobic007G227100--Sobic003G341300 Sobic007G227100--Sobic001G485100
Octagon: transcription factors


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