Gene annotation
Transcriptome id Sobic.009G040400.1
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6P6L1
Pfam PF00400
Panther DB PTHR19847 PTHR19847:SF9
NCBI CDD KOG0266; WD40 repeat-containing protein
KEGG Orthology K11801; DDB1- and CUL4-associated factor 11
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G03020 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os05g05210.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008985 , Zm00025a038100
Brachypodium PNT70517 , KQK07587 , KQK04382 , KQK04383
Barley HORVU1Hr1G018790.10 , HORVU1Hr1G018790.12 , HORVU1Hr1G018790.13 , HORVU0Hr1G000250.8 , HORVU0Hr1G000250.5 , HORVU1Hr1G018790.2 , HORVU1Hr1G018790.3 , HORVU1Hr1G018790.6 , HORVU1Hr1G018790.7 , HORVU1Hr1G018790.4 , HORVU1Hr1G018790.5 , HORVU1Hr1G018790.8 , HORVU1Hr1G018790.9 , HORVU0Hr1G000250.1 , HORVU0Hr1G000250.13 , HORVU0Hr1G000250.12 , HORVU0Hr1G000250.11 , HORVU0Hr1G000250.10 , HORVU0Hr1G000250.7 , HORVU0Hr1G000250.6 , HORVU0Hr1G000250.4 , HORVU0Hr1G000250.3 , HORVU0Hr1G000250.2
Wheat TraesCS1D02G088200 , TraesCS1B02G105200 , TraesCS1B02G105200 , TraesCS1A02G086800 , TraesCS1A02G086800 , TraesCS1A02G065300 , TraesCS1A02G065300 , TraesCS1B02G083400 , TraesCS1D02G066000
Populus -


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cDNA sequences
Sobic.009G040400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
2 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
3 Sobic.003G105900 expressed protein -
4 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
5 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
6 Sobic.010G092350 - -
7 Sobic.002G275200 PPR repeat containing protein, expressed -
8 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
9 Sobic.002G138100 ACT domain containing protein, expressed -
10 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
11 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
12 Sobic.001G394800 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
14 Sobic.010G207100 methyltransferase domain containing protein, putative, expressed -
15 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
16 Sobic.004G125800 tocopherol cyclase, chloroplast precursor, putative, expressed K09834: VTE1, tocopherol cyclase
17 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
18 Sobic.003G277400 violaxanthin de-epoxidase, putative, expressed -
19 Sobic.003G162400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH


Gene co-expression network
sample Sobic009G040400 Sobic009G040400 Sobic007G010800 Sobic007G010800 Sobic009G040400--Sobic007G010800 Sobic005G132000 Sobic005G132000 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic009G040400--Sobic005G201000 Sobic003G029500 Sobic003G029500 Sobic009G040400--Sobic003G029500 Sobic010G092350 Sobic010G092350 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic010G100900 Sobic010G100900 Sobic007G010800--Sobic010G100900 Sobic007G010800--Sobic009G040400 Sobic002G351200 Sobic002G351200 Sobic007G010800--Sobic002G351200 Sobic003G003450 Sobic003G003450 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic003G186800 Sobic003G186800 Sobic007G010800--Sobic003G186800 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic009G259100 Sobic009G259100 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic005G132000--Sobic003G003450 Sobic003G105900--Sobic009G040400 Sobic003G298200 Sobic003G298200 Sobic003G105900--Sobic003G298200 Sobic003G264800 Sobic003G264800 Sobic003G105900--Sobic003G264800 Sobic009G162600 Sobic009G162600 Sobic003G105900--Sobic009G162600 Sobic003G107500 Sobic003G107500 Sobic003G105900--Sobic003G107500 Sobic005G038500 Sobic005G038500 Sobic003G105900--Sobic005G038500 Sobic003G105900--Sobic003G029500 Sobic009G103000 Sobic009G103000 Sobic003G105900--Sobic009G103000 Sobic007G079400 Sobic007G079400 Sobic003G105900--Sobic007G079400 Sobic005G201000--Sobic003G029500 Sobic005G201000--Sobic005G132000 Sobic005G201000--Sobic009G040400 Sobic006G051800 Sobic006G051800 Sobic005G201000--Sobic006G051800 Sobic005G201000--Sobic007G010800 Sobic010G150100 Sobic010G150100 Sobic005G201000--Sobic010G150100 Sobic005G201000--Sobic010G092350 Sobic003G057233 Sobic003G057233 Sobic005G201000--Sobic003G057233 Sobic001G298900 Sobic001G298900 Sobic005G201000--Sobic001G298900 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic010G223200 Sobic010G223200 Sobic010G092350--Sobic010G223200 Sobic010G092350--Sobic009G040400 Sobic010G207100 Sobic010G207100 Sobic010G092350--Sobic010G207100 Sobic004G300100 Sobic004G300100 Sobic010G092350--Sobic004G300100 Sobic010G092350--Sobic002G356900 Sobic004G271600 Sobic004G271600 Sobic010G092350--Sobic004G271600 Sobic010G092350--Sobic003G029500 Sobic002G060800 Sobic002G060800 Sobic010G092350--Sobic002G060800 Sobic002G291800 Sobic002G291800 Sobic010G092350--Sobic002G291800 Sobic002G275200--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic002G275200--Sobic008G002400 Sobic002G275200--Sobic009G259100 Sobic002G275100 Sobic002G275100 Sobic002G275200--Sobic002G275100 Sobic005G002400 Sobic005G002400 Sobic002G275200--Sobic005G002400 Sobic002G275200--Sobic005G132000 Sobic010G178000 Sobic010G178000 Sobic002G275200--Sobic010G178000 Sobic002G275200--Sobic002G356900 Sobic002G275200--Sobic003G029500 Sobic002G356900--Sobic010G100900 Sobic007G087100 Sobic007G087100 Sobic002G356900--Sobic007G087100 Sobic002G356900--Sobic004G300100 Sobic003G380200 Sobic003G380200 Sobic002G356900--Sobic003G380200 Sobic009G170200 Sobic009G170200 Sobic002G356900--Sobic009G170200 Sobic002G356900--Sobic007G010800 Sobic002G356900--Sobic004G268400 Sobic010G231500 Sobic010G231500 Sobic002G356900--Sobic010G231500 Sobic002G356900--Sobic004G317700 Sobic001G394800 Sobic001G394800 Sobic002G138100--Sobic001G394800 Sobic002G138100--Sobic007G010800 Sobic002G138100--Sobic009G040400 Sobic009G228100 Sobic009G228100 Sobic002G138100--Sobic009G228100 Sobic001G169900 Sobic001G169900 Sobic002G138100--Sobic001G169900 Sobic003G103300 Sobic003G103300 Sobic002G138100--Sobic003G103300 Sobic002G138100--Sobic003G003450 Sobic002G138100--Sobic003G057233 Sobic002G138100--Sobic002G356900
Octagon: transcription factors


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