Gene annotation
Transcriptome id Sobic.002G275200.1
Synonym Sb02g030880
Functional annotation PPR repeat containing protein, expressed
UniProt C5X679
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF501
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01400 : -
RAP-DB (Rice) LOC_Os09g36230.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a024174 , Zm00025a047790
Brachypodium KQJ91180
Barley HORVU5Hr1G081720.4 , HORVU5Hr1G081720.1 , HORVU5Hr1G081720.3 , HORVU5Hr1G081720.2
Wheat TraesCS5B02G320600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
2 Sobic.008G002400 expressed protein -
3 Sobic.009G259100 CCT motif family protein, expressed -
4 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
5 Sobic.005G002400 expressed protein -
6 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
7 Sobic.010G178000 - -
8 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
9 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.010G207100 methyltransferase domain containing protein, putative, expressed -
11 Sobic.007G016600 expressed protein -
12 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
13 Sobic.003G154400 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
14 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase
16 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
17 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
18 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
19 Sobic.003G175800 - -
20 Sobic.010G092350 - -


Gene co-expression network
sample Sobic002G275200 Sobic002G275200 Sobic009G040400 Sobic009G040400 Sobic002G275200--Sobic009G040400 Sobic008G002400 Sobic008G002400 Sobic002G275200--Sobic008G002400 Sobic009G259100 Sobic009G259100 Sobic002G275200--Sobic009G259100 Sobic002G275100 Sobic002G275100 Sobic002G275200--Sobic002G275100 Sobic005G002400 Sobic005G002400 Sobic002G275200--Sobic005G002400 Sobic005G132000 Sobic005G132000 Sobic002G275200--Sobic005G132000 Sobic010G178000 Sobic010G178000 Sobic002G275200--Sobic010G178000 Sobic002G356900 Sobic002G356900 Sobic002G275200--Sobic002G356900 Sobic003G029500 Sobic003G029500 Sobic002G275200--Sobic003G029500 Sobic007G010800 Sobic007G010800 Sobic009G040400--Sobic007G010800 Sobic009G040400--Sobic005G132000 Sobic003G105900 Sobic003G105900 Sobic009G040400--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic010G092350 Sobic010G092350 Sobic009G040400--Sobic010G092350 Sobic009G040400--Sobic002G275200 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic008G002400--Sobic005G002400 Sobic003G326000 Sobic003G326000 Sobic008G002400--Sobic003G326000 Sobic001G181100 Sobic001G181100 Sobic008G002400--Sobic001G181100 Sobic010G271800 Sobic010G271800 Sobic008G002400--Sobic010G271800 Sobic006G020300 Sobic006G020300 Sobic008G002400--Sobic006G020300 Sobic001G112900 Sobic001G112900 Sobic008G002400--Sobic001G112900 Sobic007G016600 Sobic007G016600 Sobic008G002400--Sobic007G016600 Sobic004G190100 Sobic004G190100 Sobic008G002400--Sobic004G190100 Sobic010G113200 Sobic010G113200 Sobic008G002400--Sobic010G113200 Sobic009G259100--Sobic002G275100 Sobic003G380200 Sobic003G380200 Sobic009G259100--Sobic003G380200 Sobic004G344600 Sobic004G344600 Sobic009G259100--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic009G259100--Sobic004G267700 Sobic010G100900 Sobic010G100900 Sobic009G259100--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic009G259100--Sobic003G304300 Sobic007G121300 Sobic007G121300 Sobic009G259100--Sobic007G121300 Sobic002G351200 Sobic002G351200 Sobic009G259100--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic009G259100--Sobic002G161400 Sobic002G275100--Sobic009G259100 Sobic002G275100--Sobic003G380200 Sobic004G127800 Sobic004G127800 Sobic002G275100--Sobic004G127800 Sobic002G275100--Sobic010G100900 Sobic010G223200 Sobic010G223200 Sobic002G275100--Sobic010G223200 Sobic002G132400 Sobic002G132400 Sobic002G275100--Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G275100--Sobic004G271600 Sobic007G006200 Sobic007G006200 Sobic002G275100--Sobic007G006200 Sobic006G191500 Sobic006G191500 Sobic002G275100--Sobic006G191500 Sobic005G002400--Sobic008G002400 Sobic005G002400--Sobic003G326000 Sobic005G002400--Sobic001G112900 Sobic005G002400--Sobic001G181100 Sobic002G052100 Sobic002G052100 Sobic005G002400--Sobic002G052100 Sobic005G002400--Sobic004G190100 Sobic005G002400--Sobic010G271800 Sobic005G002400--Sobic006G020300 Sobic003G154400 Sobic003G154400 Sobic005G002400--Sobic003G154400 Sobic005G132000--Sobic003G029500 Sobic005G132000--Sobic005G201000 Sobic005G132000--Sobic009G259100 Sobic005G132000--Sobic009G040400 Sobic005G132000--Sobic007G010800 Sobic007G146400 Sobic007G146400 Sobic005G132000--Sobic007G146400 Sobic010G132600 Sobic010G132600 Sobic005G132000--Sobic010G132600 Sobic002G295100 Sobic002G295100 Sobic005G132000--Sobic002G295100 Sobic003G003450 Sobic003G003450 Sobic005G132000--Sobic003G003450 Sobic006G036300 Sobic006G036300 Sobic010G178000--Sobic006G036300 Sobic010G178000--Sobic003G154400 Sobic010G207100 Sobic010G207100 Sobic010G178000--Sobic010G207100 Sobic002G108500 Sobic002G108500 Sobic010G178000--Sobic002G108500 Sobic001G434000 Sobic001G434000 Sobic010G178000--Sobic001G434000 Sobic006G145700 Sobic006G145700 Sobic010G178000--Sobic006G145700 Sobic010G178000--Sobic005G002400 Sobic010G178000--Sobic006G020300 Sobic010G178000--Sobic004G190100 Sobic002G356900--Sobic010G100900 Sobic007G087100 Sobic007G087100 Sobic002G356900--Sobic007G087100 Sobic004G300100 Sobic004G300100 Sobic002G356900--Sobic004G300100 Sobic002G356900--Sobic003G380200 Sobic009G170200 Sobic009G170200 Sobic002G356900--Sobic009G170200 Sobic002G356900--Sobic007G010800 Sobic004G268400 Sobic004G268400 Sobic002G356900--Sobic004G268400 Sobic010G231500 Sobic010G231500 Sobic002G356900--Sobic010G231500 Sobic004G317700 Sobic004G317700 Sobic002G356900--Sobic004G317700 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic006G051800 Sobic006G051800 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic003G029500--Sobic010G092350 Sobic005G106600 Sobic005G106600 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100
Octagon: transcription factors


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