Gene annotation
Transcriptome id Sobic.009G123300.1
Synonym Sb09g019100, SQD1
Functional annotation NAD dependent epimerase/dehydratase family protein, putative, expressed
UniProt C5YXF3
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF337
NCBI CDD KOG1371; UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
KEGG Orthology K06118; SQD1, UDP-sulfoquinovose synthase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT4G33030 : sulfoquinovosyldiacylglycerol 1
RAP-DB (Rice) LOC_Os05g32140.1 : NAD dependent epimerase/dehydratase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a037067
Brachypodium KQK06535 , KQK06534 , KQJ97962 , KQJ97963
Barley HORVU1Hr1G056610.1 , HORVU1Hr1G056630.1 , HORVU1Hr1G056610.3 , HORVU1Hr1G056610.5 , HORVU1Hr1G056610.4
Wheat TraesCS1D02G241800 , TraesCS1D02G241800 , TraesCS1A02G241900 , TraesCS1B02G253500 , TraesCS1B02G253500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
2 Sobic.007G016600 expressed protein -
3 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
4 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
5 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
6 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
7 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
9 Sobic.003G304300 expressed protein -
10 Sobic.004G154800 expressed protein -
11 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
12 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
13 Sobic.010G207100 methyltransferase domain containing protein, putative, expressed -
14 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
15 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
16 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
17 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
18 Sobic.007G087100 pentatricopeptide, putative, expressed -
19 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -
20 Sobic.006G140500 photosystem-II repair protein, putative, expressed -


Gene co-expression network
sample Sobic009G123300 Sobic009G123300 Sobic002G356900 Sobic002G356900 Sobic009G123300--Sobic002G356900 Sobic007G016600 Sobic007G016600 Sobic009G123300--Sobic007G016600 Sobic004G268400 Sobic004G268400 Sobic009G123300--Sobic004G268400 Sobic008G088821 Sobic008G088821 Sobic009G123300--Sobic008G088821 Sobic001G018000 Sobic001G018000 Sobic009G123300--Sobic001G018000 Sobic004G300100 Sobic004G300100 Sobic009G123300--Sobic004G300100 Sobic004G267700 Sobic004G267700 Sobic009G123300--Sobic004G267700 Sobic003G380200 Sobic003G380200 Sobic009G123300--Sobic003G380200 Sobic003G304300 Sobic003G304300 Sobic009G123300--Sobic003G304300 Sobic010G100900 Sobic010G100900 Sobic002G356900--Sobic010G100900 Sobic007G087100 Sobic007G087100 Sobic002G356900--Sobic007G087100 Sobic002G356900--Sobic004G300100 Sobic002G356900--Sobic003G380200 Sobic009G170200 Sobic009G170200 Sobic002G356900--Sobic009G170200 Sobic007G010800 Sobic007G010800 Sobic002G356900--Sobic007G010800 Sobic002G356900--Sobic004G268400 Sobic010G231500 Sobic010G231500 Sobic002G356900--Sobic010G231500 Sobic004G317700 Sobic004G317700 Sobic002G356900--Sobic004G317700 Sobic007G016600--Sobic004G268400 Sobic007G016600--Sobic004G267700 Sobic007G016600--Sobic001G018000 Sobic007G016600--Sobic003G304300 Sobic002G351200 Sobic002G351200 Sobic007G016600--Sobic002G351200 Sobic007G016600--Sobic010G100900 Sobic010G207100 Sobic010G207100 Sobic007G016600--Sobic010G207100 Sobic003G186800 Sobic003G186800 Sobic007G016600--Sobic003G186800 Sobic007G016600--Sobic003G380200 Sobic004G268400--Sobic004G267700 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic004G268400--Sobic010G100900 Sobic010G101000 Sobic010G101000 Sobic004G268400--Sobic010G101000 Sobic004G268400--Sobic003G380200 Sobic001G015200 Sobic001G015200 Sobic008G088821--Sobic001G015200 Sobic006G140500 Sobic006G140500 Sobic008G088821--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic008G088821--Sobic004G028300 Sobic009G119300 Sobic009G119300 Sobic008G088821--Sobic009G119300 Sobic003G103300 Sobic003G103300 Sobic008G088821--Sobic003G103300 Sobic008G088821--Sobic001G018000 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic001G018000--Sobic004G268400 Sobic001G018000--Sobic002G351200 Sobic001G018000--Sobic007G016600 Sobic001G018000--Sobic010G101000 Sobic001G018000--Sobic004G267700 Sobic001G411100 Sobic001G411100 Sobic001G018000--Sobic001G411100 Sobic001G018000--Sobic002G030900 Sobic001G018000--Sobic003G304300 Sobic001G018000--Sobic003G186800 Sobic004G300100--Sobic010G231500 Sobic004G300100--Sobic002G356900 Sobic004G300100--Sobic004G317700 Sobic002G081400 Sobic002G081400 Sobic004G300100--Sobic002G081400 Sobic004G271600 Sobic004G271600 Sobic004G300100--Sobic004G271600 Sobic004G300100--Sobic009G170200 Sobic002G132400 Sobic002G132400 Sobic004G300100--Sobic002G132400 Sobic004G165900 Sobic004G165900 Sobic004G300100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G300100--Sobic004G252500 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic004G267700--Sobic010G101000 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic004G267700--Sobic002G351200 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic003G380200--Sobic004G268400 Sobic003G304300--Sobic004G267700 Sobic003G304300--Sobic006G191500 Sobic003G304300--Sobic002G351200 Sobic003G304300--Sobic002G161400 Sobic004G344600 Sobic004G344600 Sobic003G304300--Sobic004G344600 Sobic001G112900 Sobic001G112900 Sobic003G304300--Sobic001G112900 Sobic003G304300--Sobic003G186800 Sobic003G304300--Sobic003G380200 Sobic003G304300--Sobic004G268400
Octagon: transcription factors


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