Gene annotation
| Transcriptome id | Sobic.004G317700.1 |
|---|---|
| Synonym | Sb04g034870, OVA2 |
| Functional annotation | tRNA synthetase class I, putative, expressed |
| UniProt | A0A194YSV0 |
| Pfam | PF06827 PF08264 PF00133 |
| Panther DB | PTHR11946 PTHR11946:SF82 |
| NCBI CDD | - |
| KEGG Orthology | K01870; IARS, isoleucyl-tRNA synthetase |
| Gene Ontology | GO:0006418; tRNA aminoacylation for protein translation GO:0000166nucleotide binding GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity |
Orthologs (automatic annotation)
| TAIR | AT5G49030 : tRNA synthetase class I (I, L, M and V) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g53770.1 : tRNA synthetase class I, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022339 |
| Brachypodium | KQK01631 |
| Barley | HORVU6Hr1G081370.11 , HORVU6Hr1G081370.10 , HORVU6Hr1G081370.13 , HORVU6Hr1G081370.12 , HORVU6Hr1G081370.4 , HORVU6Hr1G081370.6 , HORVU6Hr1G081370.1 , HORVU6Hr1G081370.5 , HORVU6Hr1G081370.7 , HORVU6Hr1G081370.3 , HORVU6Hr1G081370.2 , HORVU6Hr1G081370.9 , HORVU6Hr1G081370.8 |
| Wheat | TraesCS6B02G367200 , TraesCS6D02G317100 , TraesCS2D02G354400 , TraesCS2D02G354400 , TraesCS6D02G317100 , TraesCS6D02G317100 , TraesCS2B02G374800 , TraesCS6A02G336800 |
| Populus | - |
JBrowse
| Sobic.004G317700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G081400 | ABC1 family domain containing protein, putative, expressed | K08869: ADCK, aarF domain-containing kinase |
| 2 | Sobic.002G356900 | threonyl-tRNA synthetase, putative, expressed | K01868: TARS, threonyl-tRNA synthetase |
| 3 | Sobic.004G300100 | hydrolase, alpha/beta fold family domain containing protein, expressed | K07019: uncharacterized protein |
| 4 | Sobic.007G087100 | pentatricopeptide, putative, expressed | - |
| 5 | Sobic.009G073900 | thioredoxin, putative, expressed | - |
| 6 | Sobic.003G003450 | - | K01177: beta-amylase |
| 7 | Sobic.002G060800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf45, putative, expressed | - |
| 8 | Sobic.002G072400 | zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed | K00514: ZDS, zeta-carotene desaturase |
| 9 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 10 | Sobic.004G271600 | region found in RelA/SpoT proteins containing protein, expressed | - |
| 11 | Sobic.009G225600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | - |
| 12 | Sobic.006G232600 | amine oxidase, flavin-containing, domain containing protein, expressed | K02293: PDS, 15-cis-phytoene desaturase |
| 13 | Sobic.001G220000 | PPR repeat containing protein, expressed | - |
| 14 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 15 | Sobic.009G170200 | translation initiation factor IF-2, chloroplast precursor, putative, expressed | K02519: infB, translation initiation factor IF-2 |
| 16 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 17 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 18 | Sobic.010G100900 | alanyl-tRNA synthetase, putative, expressed | K01872: AARS, alanyl-tRNA synthetase |
| 19 | Sobic.007G010800 | similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein | - |
| 20 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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