Gene annotation
| Transcriptome id | Sobic.002G356900.2,Sobic.002G356900.1 |
|---|---|
| Synonym | EMB2761, Sb02g037830 |
| Functional annotation | threonyl-tRNA synthetase, putative, expressed |
| UniProt | A0A1B6QF84 , A0A1W0W755 |
| Pfam | PF07973 PF03129 PF00587 |
| Panther DB | PTHR11451 PTHR11451:SF32 |
| NCBI CDD | KOG1637; Threonyl-tRNA synthetase |
| KEGG Orthology | K01868; TARS, threonyl-tRNA synthetase |
| Gene Ontology | GO:0016876; aminoacyl-tRNA ligase activity GO:0005524ATP binding GO:0006418tRNA aminoacylation for protein translation GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding |
Orthologs (automatic annotation)
| TAIR | AT2G04842 : threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative |
|---|---|
| RAP-DB (Rice) | LOC_Os02g33500.1 : threonyl-tRNA synthetase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048551 |
| Brachypodium | KQK01049 |
| Barley | HORVU6Hr1G070790.13 , HORVU6Hr1G070790.12 , HORVU6Hr1G070790.11 , HORVU6Hr1G070790.10 , HORVU6Hr1G070790.9 , HORVU6Hr1G070790.8 , HORVU6Hr1G070790.3 , HORVU6Hr1G070790.2 , HORVU6Hr1G070790.1 , HORVU6Hr1G070790.7 , HORVU6Hr1G070790.6 , HORVU6Hr1G070790.5 , HORVU6Hr1G070790.4 |
| Wheat | TraesCS6B02G310700 , TraesCS6D02G262800 , TraesCS6A02G282300 |
| Populus | PNT05236 , PNT05235 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G100900 | alanyl-tRNA synthetase, putative, expressed | K01872: AARS, alanyl-tRNA synthetase |
| 2 | Sobic.007G087100 | pentatricopeptide, putative, expressed | - |
| 3 | Sobic.004G300100 | hydrolase, alpha/beta fold family domain containing protein, expressed | K07019: uncharacterized protein |
| 4 | Sobic.003G380200 | SNARE associated Golgi protein, putative, expressed | - |
| 5 | Sobic.009G170200 | translation initiation factor IF-2, chloroplast precursor, putative, expressed | K02519: infB, translation initiation factor IF-2 |
| 6 | Sobic.007G010800 | similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein | - |
| 7 | Sobic.004G268400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed | - |
| 8 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 9 | Sobic.004G317700 | tRNA synthetase class I, putative, expressed | K01870: IARS, isoleucyl-tRNA synthetase |
| 10 | Sobic.007G016600 | expressed protein | - |
| 11 | Sobic.009G123300 | NAD dependent epimerase/dehydratase family protein, putative, expressed | K06118: SQD1, UDP-sulfoquinovose synthase |
| 12 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 13 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 14 | Sobic.002G081400 | ABC1 family domain containing protein, putative, expressed | K08869: ADCK, aarF domain-containing kinase |
| 15 | Sobic.009G004100 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 16 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 17 | Sobic.002G132400 | -(PubMedID : 26465154)@expressed protein | - |
| 18 | Sobic.002G351200 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 19 | Sobic.001G018000 | amine oxidase, flavin-containing, domain containing protein, expressed | - |
| 20 | Sobic.010G207100 | methyltransferase domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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