Gene annotation
Transcriptome id Sobic.007G166300.1
Synonym NMDH ,NADP-MDH;MDH;NADP-dependent malate dehydrogenase , MDH, Sb07g023920
Functional annotation PPDK (PubMedID : 19549309)
lactate/malate dehydrogenase family protein (PubMedID : 26465154)
NADP-malete dehydrogenase (PubMedID : 26904072)
- (PubMedID : 26976818)
"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme" (PubMedID : 2373367)
lactate/malate dehydrogenase, putative, expressed
UniProt P17606 , C5YMV5
Pfam PF00056 PF02866
Panther DB PTHR23382 PTHR23382:SF0
NCBI CDD KOG1496; Malate dehydrogenase
KEGG Orthology K00051; malate dehydrogenase (NADP+)
Gene Ontology GO:0016491; oxidoreductase activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0016615malate dehydrogenase activity GO:0006108malate metabolic process


Orthologs (automatic annotation)
TAIR AT5G58330 : lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os08g44810.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a005567
Brachypodium KQJ94667 , KQJ94669 , KQJ94668
Barley HORVU7Hr1G060260.13 , HORVU7Hr1G060260.12 , HORVU7Hr1G060260.11 , HORVU7Hr1G060260.10 , HORVU7Hr1G060260.9 , HORVU7Hr1G060260.8 , HORVU7Hr1G060260.7 , HORVU7Hr1G060260.6 , HORVU7Hr1G060260.5 , HORVU7Hr1G060260.4 , HORVU7Hr1G060260.3 , HORVU7Hr1G060260.2 , HORVU4Hr1G090080.1
Wheat TraesCS7B02G197000 , TraesCS7B02G197000 , TraesCS7D02G283900 , TraesCSU02G135100 , TraesCSU02G135100 , TraesCSU02G135100 , TraesCSU02G135100 , TraesCSU02G127700 , TraesCSU02G127700 , TraesCS5A02G549900 , TraesCS7D02G283900
Populus -


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cDNA sequences
Sobic.007G166300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
2 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
3 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
4 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
5 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
6 Sobic.007G124500 methyltransferase, putative, expressed -
7 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
8 Sobic.007G108900 APE1, putative, expressed -
9 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
10 Sobic.002G072500 expressed protein -
11 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
12 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
13 Sobic.009G132000 expressed protein -
14 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.006G235350 - -
16 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
17 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
18 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
19 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
20 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase


Gene co-expression network
sample Sobic007G166300 Sobic007G166300 Sobic005G028800 Sobic005G028800 Sobic007G166300--Sobic005G028800 Sobic001G393300 Sobic001G393300 Sobic007G166300--Sobic001G393300 Sobic004G103300 Sobic004G103300 Sobic007G166300--Sobic004G103300 Sobic001G509200 Sobic001G509200 Sobic007G166300--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic007G166300--Sobic001G015200 Sobic007G124500 Sobic007G124500 Sobic007G166300--Sobic007G124500 Sobic007G135800 Sobic007G135800 Sobic007G166300--Sobic007G135800 Sobic007G108900 Sobic007G108900 Sobic007G166300--Sobic007G108900 Sobic002G298800 Sobic002G298800 Sobic007G166300--Sobic002G298800 Sobic005G028800--Sobic007G166300 Sobic005G028800--Sobic004G103300 Sobic005G028800--Sobic001G509200 Sobic004G124400 Sobic004G124400 Sobic005G028800--Sobic004G124400 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic010G231500 Sobic010G231500 Sobic005G028800--Sobic010G231500 Sobic005G028800--Sobic001G393300 Sobic005G028800--Sobic007G124500 Sobic001G393300--Sobic002G298800 Sobic001G393300--Sobic007G166300 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic003G094100 Sobic003G094100 Sobic001G393300--Sobic003G094100 Sobic001G393300--Sobic007G108900 Sobic002G198300 Sobic002G198300 Sobic001G393300--Sobic002G198300 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic001G368600 Sobic001G368600 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic004G103300--Sobic007G108900 Sobic006G097500 Sobic006G097500 Sobic004G103300--Sobic006G097500 Sobic004G103300--Sobic005G028800 Sobic004G103300--Sobic007G135800 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic008G088821 Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic003G103300 Sobic003G103300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic010G101000 Sobic010G101000 Sobic001G015200--Sobic010G101000 Sobic007G124500--Sobic002G072500 Sobic001G411100 Sobic001G411100 Sobic007G124500--Sobic001G411100 Sobic007G124500--Sobic007G166300 Sobic007G124500--Sobic001G509200 Sobic010G100900 Sobic010G100900 Sobic007G124500--Sobic010G100900 Sobic002G351200 Sobic002G351200 Sobic007G124500--Sobic002G351200 Sobic007G124500--Sobic004G103300 Sobic007G124500--Sobic010G231500 Sobic007G124500--Sobic001G393300 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic001G283100 Sobic001G283100 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic007G108900--Sobic002G298800 Sobic002G298800--Sobic001G393300 Sobic002G298800--Sobic002G198300 Sobic002G298800--Sobic004G103300 Sobic007G103400 Sobic007G103400 Sobic002G298800--Sobic007G103400 Sobic002G298800--Sobic006G097500 Sobic002G298800--Sobic001G368600 Sobic002G298800--Sobic003G094100 Sobic004G353100 Sobic004G353100 Sobic002G298800--Sobic004G353100 Sobic002G275300 Sobic002G275300 Sobic002G298800--Sobic002G275300
Octagon: transcription factors


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