Gene annotation
| Transcriptome id | Sobic.005G028800.1 |
|---|---|
| Synonym | Sb05g002420 |
| Functional annotation | astaxanthin synthase KC28, putative, expressed |
| UniProt | C5Y464 |
| Pfam | PF03435 |
| Panther DB | PTHR12286 PTHR12286:SF7 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G50450 : Saccharopine dehydrogenase |
|---|---|
| RAP-DB (Rice) | LOC_Os12g04260.1 : astaxanthin synthase KC28, putative, expressed |
| MaizeGDB (Corn) | Zm00025a013088 , Zm00025a013095 |
| Brachypodium | PNT65494 , PNT65490 , PNT65491 , PNT65492 , PNT65493 , KQJ92379 , KQJ92378 , PNT65489 , KQJ92381 |
| Barley | HORVU5Hr1G043550.10 , HORVU5Hr1G043550.11 , HORVU5Hr1G043550.8 , HORVU5Hr1G043550.9 , HORVU5Hr1G043550.4 , HORVU5Hr1G043550.5 , HORVU5Hr1G043550.6 , HORVU5Hr1G043550.7 , HORVU5Hr1G043550.1 , HORVU5Hr1G043550.2 , HORVU5Hr1G043550.3 |
| Wheat | TraesCS5B02G134600 , TraesCS5B02G134600 , TraesCS5A02G136000 , TraesCS5D02G142300 , TraesCS5A02G135800 , TraesCS5D02G142600 , TraesCS5B02G135000 , TraesCS5B02G135000 , TraesCS5B02G134600 |
| Populus | - |
JBrowse
| Sobic.005G028800 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 2 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 3 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 4 | Sobic.004G124400 | uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed | - |
| 5 | Sobic.001G015200 | Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed | - |
| 6 | Sobic.007G135800 | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed | K06891: ATP-dependent Clp protease adaptor protein ClpS |
| 7 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 8 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 9 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 10 | Sobic.006G097500 | zeaxanthin epoxidase, chloroplast precursor, putative, expressed | K09838: ZEP, zeaxanthin epoxidase |
| 11 | Sobic.006G140500 | photosystem-II repair protein, putative, expressed | - |
| 12 | Sobic.006G063900 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 13 | Sobic.009G170200 | translation initiation factor IF-2, chloroplast precursor, putative, expressed | K02519: infB, translation initiation factor IF-2 |
| 14 | Sobic.006G235350 | - | - |
| 15 | Sobic.001G436400 | immature colon carcinoma transcript 1 protein precursor, putative, expressed | K15033: peptidyl-tRNA hydrolase ICT1 |
| 16 | Sobic.004G268400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed | - |
| 17 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 18 | Sobic.007G087100 | pentatricopeptide, putative, expressed | - |
| 19 | Sobic.001G368600 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 20 | Sobic.010G100900 | alanyl-tRNA synthetase, putative, expressed | K01872: AARS, alanyl-tRNA synthetase |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
