Gene annotation
| Transcriptome id | Sobic.006G097500.1 |
|---|---|
| Synonym | IBS3, LOS6, ABA1, Sb06g018220, ZEP, ATABA1, ATZEP, NPQ2 |
| Functional annotation | zeaxanthin epoxidase, chloroplast precursor, putative, expressed |
| UniProt | C5Y9B8 |
| Pfam | PF00498 PF01494 |
| Panther DB | PTHR13789 PTHR13789:SF245 |
| NCBI CDD | KOG2614; Kynurenine 3-monooxygenase and related flavoprotein monooxygenases |
| KEGG Orthology | K09838; ZEP, zeaxanthin epoxidase |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT5G67030 : zeaxanthin epoxidase (ZEP) (ABA1) |
|---|---|
| RAP-DB (Rice) | LOC_Os04g37619.1 : zeaxanthin epoxidase, chloroplast precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a057992 , Zm00025a056161 , Zm00025a011188 |
| Brachypodium | KQJ82870 |
| Barley | HORVU2Hr1G078840.11 , HORVU2Hr1G078840.10 , HORVU2Hr1G078840.6 , HORVU2Hr1G078840.5 , HORVU2Hr1G078840.3 , HORVU2Hr1G078840.2 , HORVU2Hr1G078840.1 , HORVU2Hr1G078840.9 , HORVU2Hr1G078840.8 , HORVU2Hr1G078840.7 , HORVU2Hr1G078840.4 |
| Wheat | TraesCS2A02G317000 , TraesCS2A02G317000 , TraesCS2A02G317000 , TraesCS2B02G335400 , TraesCS2B02G335400 , TraesCS2B02G335400 , TraesCS2D02G314900 , TraesCS2D02G314900 , TraesCS2D02G314900 |
| Populus | PNT27070 , PNT27071 , PNT27072 , PNT27073 , PNT27074 , PNT36625 , PNT36624 , PNT27069 , PNT27068 , PNT27067 , PNT27066 , PNT27065 , PNT27064 |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G061900 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 2 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 3 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 4 | Sobic.006G265900 | thioredoxin, putative, expressed | K03671: thioredoxin 1 |
| 5 | Sobic.001G368600 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 6 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 7 | Sobic.007G169100 | glutathione S-transferase, N-terminal domain containing protein, expressed | - |
| 8 | Sobic.005G005400 | MATE efflux family protein(PubMedID : 26465154)@MATE efflux protein, putative, expressed | - |
| 9 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
| 10 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 11 | Sobic.009G004100 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 12 | Sobic.004G165900 | SOUL heme-binding protein, putative, expressed | - |
| 13 | Sobic.001G128600 | -(PubMedID : 26465154)@DUF1517 domain containing protein, putative, expressed | - |
| 14 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 15 | Sobic.003G070900 | inner membrane protein, putative, expressed | K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase |
| 16 | Sobic.004G124400 | uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed | - |
| 17 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 18 | Sobic.003G328100 | expressed protein | - |
| 19 | Sobic.007G135800 | ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed | K06891: ATP-dependent Clp protease adaptor protein ClpS |
| 20 | Sobic.006G155500 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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