Gene annotation
| Transcriptome id | Sobic.005G005400.2,Sobic.005G005400.3,Sobic.005G005400.1 |
|---|---|
| Synonym | Sb05g000630 |
| Functional annotation | MATE efflux family protein (PubMedID : 26465154) MATE efflux protein, putative, expressed |
| UniProt | A0A1B6PPH4 , A0A1B6PPG5 |
| Pfam | PF01554 |
| Panther DB | PTHR11206 PTHR11206:SF101 |
| NCBI CDD | KOG1347; Uncharacterized membrane protein, predicted efflux pump |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport |
Orthologs (automatic annotation)
| TAIR | AT2G38330 : MATE efflux family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os12g01580.1 : MATE efflux protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQJ92618 , KQJ92619 |
| Barley | HORVU4Hr1G024560.22 , HORVU4Hr1G024560.23 , HORVU4Hr1G024560.20 , HORVU4Hr1G024560.21 , HORVU4Hr1G024560.26 , HORVU4Hr1G024560.27 , HORVU4Hr1G024560.24 , HORVU4Hr1G024560.25 , HORVU4Hr1G024560.9 , HORVU4Hr1G024560.8 , HORVU4Hr1G024560.3 , HORVU4Hr1G024560.2 , HORVU4Hr1G024560.1 , HORVU4Hr1G024560.7 , HORVU4Hr1G024560.6 , HORVU4Hr1G024560.5 , HORVU4Hr1G024560.4 , HORVU5Hr1G047540.31 , HORVU5Hr1G047540.30 , HORVU4Hr1G024560.19 , HORVU4Hr1G024560.18 , HORVU4Hr1G024560.13 , HORVU4Hr1G024560.12 , HORVU4Hr1G024560.11 , HORVU4Hr1G024560.10 , HORVU4Hr1G024560.17 , HORVU4Hr1G024560.16 , HORVU4Hr1G024560.15 , HORVU4Hr1G024560.14 , HORVU5Hr1G047540.29 |
| Wheat | TraesCS4A02G180600 , TraesCS4A02G180600 , TraesCS4D02G131900 |
| Populus | - |
JBrowse
| Sobic.005G005400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G097500 | zeaxanthin epoxidase, chloroplast precursor, putative, expressed | K09838: ZEP, zeaxanthin epoxidase |
| 2 | Sobic.001G368600 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 3 | Sobic.004G103300 | Complex I intermediate-associated protein 30 domain containing protein, putative, expressed | - |
| 4 | Sobic.002G298800 | PAP fibrillin family domain containing protein, expressed | - |
| 5 | Sobic.007G124500 | methyltransferase, putative, expressed | - |
| 6 | Sobic.001G393300 | HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed | - |
| 7 | Sobic.002G072500 | expressed protein | - |
| 8 | Sobic.010G231500 | glutamate receptor, putative, expressed | K05387: glutamate receptor, ionotropic, plant |
| 9 | Sobic.006G265900 | thioredoxin, putative, expressed | K03671: thioredoxin 1 |
| 10 | Sobic.001G509200 | "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed | K11159: carotenoid cleavage oxygenase |
| 11 | Sobic.007G166300 | PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed | K00051: malate dehydrogenase (NADP+) |
| 12 | Sobic.009G004100 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 13 | Sobic.002G198300 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 14 | Sobic.007G108900 | APE1, putative, expressed | - |
| 15 | Sobic.009G080900 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 16 | Sobic.001G436400 | immature colon carcinoma transcript 1 protein precursor, putative, expressed | K15033: peptidyl-tRNA hydrolase ICT1 |
| 17 | Sobic.004G165900 | SOUL heme-binding protein, putative, expressed | - |
| 18 | Sobic.002G061900 | peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed | - |
| 19 | Sobic.006G025500 | - | - |
| 20 | Sobic.005G028800 | astaxanthin synthase KC28, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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