Gene annotation
Transcriptome id Sobic.002G072500.1
Synonym Sb02g006110
Functional annotation expressed protein
UniProt C5XCP5
Pfam PF10184
Panther DB PTHR34123 PTHR34123:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04890 : Uncharacterized conserved protein (DUF2358)
RAP-DB (Rice) LOC_Os07g10495.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G124500 methyltransferase, putative, expressed -
2 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
3 Sobic.001G368600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
4 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
5 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
6 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
7 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
8 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
9 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
11 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
12 Sobic.001G411100 expressed protein -
13 Sobic.009G004100 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
14 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
15 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
17 Sobic.002G298800 PAP fibrillin family domain containing protein, expressed -
18 Sobic.005G005400 MATE efflux family protein(PubMedID : 26465154)@MATE efflux protein, putative, expressed -
19 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
20 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase


Gene co-expression network
sample Sobic002G072500 Sobic002G072500 Sobic007G124500 Sobic007G124500 Sobic002G072500--Sobic007G124500 Sobic001G393300 Sobic001G393300 Sobic002G072500--Sobic001G393300 Sobic001G368600 Sobic001G368600 Sobic002G072500--Sobic001G368600 Sobic001G509200 Sobic001G509200 Sobic002G072500--Sobic001G509200 Sobic007G166300 Sobic007G166300 Sobic002G072500--Sobic007G166300 Sobic007G135800 Sobic007G135800 Sobic002G072500--Sobic007G135800 Sobic010G100900 Sobic010G100900 Sobic002G072500--Sobic010G100900 Sobic004G103300 Sobic004G103300 Sobic002G072500--Sobic004G103300 Sobic002G351200 Sobic002G351200 Sobic002G072500--Sobic002G351200 Sobic007G124500--Sobic002G072500 Sobic001G411100 Sobic001G411100 Sobic007G124500--Sobic001G411100 Sobic007G124500--Sobic007G166300 Sobic007G124500--Sobic001G509200 Sobic007G124500--Sobic010G100900 Sobic007G124500--Sobic002G351200 Sobic007G124500--Sobic004G103300 Sobic010G231500 Sobic010G231500 Sobic007G124500--Sobic010G231500 Sobic007G124500--Sobic001G393300 Sobic002G298800 Sobic002G298800 Sobic001G393300--Sobic002G298800 Sobic001G393300--Sobic007G166300 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic003G094100 Sobic003G094100 Sobic001G393300--Sobic003G094100 Sobic007G108900 Sobic007G108900 Sobic001G393300--Sobic007G108900 Sobic002G198300 Sobic002G198300 Sobic001G393300--Sobic002G198300 Sobic001G393300--Sobic007G135800 Sobic001G393300--Sobic002G072500 Sobic001G368600--Sobic004G103300 Sobic006G097500 Sobic006G097500 Sobic001G368600--Sobic006G097500 Sobic001G368600--Sobic002G298800 Sobic001G368600--Sobic001G393300 Sobic001G368600--Sobic007G135800 Sobic001G368600--Sobic002G072500 Sobic001G368600--Sobic002G198300 Sobic001G368600--Sobic007G166300 Sobic006G025500 Sobic006G025500 Sobic001G368600--Sobic006G025500 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic006G213700 Sobic006G213700 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic005G028800 Sobic005G028800 Sobic007G166300--Sobic005G028800 Sobic007G166300--Sobic001G393300 Sobic007G166300--Sobic004G103300 Sobic007G166300--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic007G166300--Sobic001G015200 Sobic007G166300--Sobic007G124500 Sobic007G166300--Sobic007G135800 Sobic007G166300--Sobic007G108900 Sobic007G166300--Sobic002G298800 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic003G409700 Sobic003G409700 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic010G100900--Sobic002G351200 Sobic003G380200 Sobic003G380200 Sobic010G100900--Sobic003G380200 Sobic002G132400 Sobic002G132400 Sobic010G100900--Sobic002G132400 Sobic004G268400 Sobic004G268400 Sobic010G100900--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G100900--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic010G100900--Sobic004G267700 Sobic004G271600 Sobic004G271600 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic004G103300--Sobic001G509200 Sobic004G103300--Sobic007G166300 Sobic004G103300--Sobic001G393300 Sobic004G103300--Sobic001G368600 Sobic004G103300--Sobic002G298800 Sobic004G103300--Sobic007G108900 Sobic004G103300--Sobic006G097500 Sobic004G103300--Sobic005G028800 Sobic004G103300--Sobic007G135800 Sobic002G351200--Sobic010G100900 Sobic001G018000 Sobic001G018000 Sobic002G351200--Sobic001G018000 Sobic002G351200--Sobic003G304300 Sobic002G351200--Sobic004G268400 Sobic002G351200--Sobic004G267700 Sobic010G101000 Sobic010G101000 Sobic002G351200--Sobic010G101000 Sobic002G351200--Sobic002G132400 Sobic003G186800 Sobic003G186800 Sobic002G351200--Sobic003G186800 Sobic002G213400 Sobic002G213400 Sobic002G351200--Sobic002G213400
Octagon: transcription factors


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