Gene annotation
Transcriptome id Sobic.006G213700.1
Synonym Sb06g028400, DECR, SDRB
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed
UniProt C5YG01
Pfam PF08659
Panther DB PTHR24322 PTHR24322:SF427
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K13237; peroxisomal 2,4-dienoyl-CoA reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12800 : short-chain dehydrogenase-reductase B
RAP-DB (Rice) LOC_Os04g52400.1 : oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a057018 , Zm00025a009808
Brachypodium KQJ84576 , KQJ84577
Barley HORVU2Hr1G098920.2 , HORVU2Hr1G098920.3 , HORVU2Hr1G098920.1
Wheat TraesCS2D02G418900 , TraesCS2A02G422500 , TraesCS2B02G441000 , TraesCS2B02G441000
Populus -


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cDNA sequences
Sobic.006G213700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
2 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
3 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
4 Sobic.003G003450 - K01177: beta-amylase
5 Sobic.009G073900 thioredoxin, putative, expressed -
6 Sobic.001G499100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC-2 type transporter domain containing protein, expressed -
7 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G409700 rieske domain containing protein, expressed -
9 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
10 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
11 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
12 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
14 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
15 Sobic.001G077300 thioredoxin, putative, expressed -
16 Sobic.007G087100 pentatricopeptide, putative, expressed -
17 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
19 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
20 Sobic.007G108900 APE1, putative, expressed -


Gene co-expression network
sample Sobic006G213700 Sobic006G213700 Sobic001G509200 Sobic001G509200 Sobic006G213700--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic006G213700--Sobic007G135800 Sobic003G380200 Sobic003G380200 Sobic006G213700--Sobic003G380200 Sobic003G003450 Sobic003G003450 Sobic006G213700--Sobic003G003450 Sobic009G073900 Sobic009G073900 Sobic006G213700--Sobic009G073900 Sobic001G499100 Sobic001G499100 Sobic006G213700--Sobic001G499100 Sobic003G094100 Sobic003G094100 Sobic006G213700--Sobic003G094100 Sobic003G409700 Sobic003G409700 Sobic006G213700--Sobic003G409700 Sobic006G090100 Sobic006G090100 Sobic006G213700--Sobic006G090100 Sobic001G509200--Sobic007G135800 Sobic004G103300 Sobic004G103300 Sobic001G509200--Sobic004G103300 Sobic001G393300 Sobic001G393300 Sobic001G509200--Sobic001G393300 Sobic007G108900 Sobic007G108900 Sobic001G509200--Sobic007G108900 Sobic007G166300 Sobic007G166300 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic001G509200--Sobic006G213700 Sobic001G509200--Sobic006G090100 Sobic001G509200--Sobic009G073900 Sobic007G135800--Sobic001G509200 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G135800--Sobic007G166300 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic003G380200--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic003G380200--Sobic003G304300 Sobic004G267700 Sobic004G267700 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic003G003450--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic003G003450--Sobic001G077300 Sobic003G003450--Sobic001G509200 Sobic003G003450--Sobic006G213700 Sobic002G081400 Sobic002G081400 Sobic003G003450--Sobic002G081400 Sobic006G232600 Sobic006G232600 Sobic003G003450--Sobic006G232600 Sobic003G003450--Sobic006G090100 Sobic003G003450--Sobic007G087100 Sobic001G207800 Sobic001G207800 Sobic003G003450--Sobic001G207800 Sobic009G073900--Sobic001G077300 Sobic009G073900--Sobic003G003450 Sobic009G073900--Sobic006G090100 Sobic009G073900--Sobic001G509200 Sobic009G073900--Sobic007G087100 Sobic009G073900--Sobic003G094100 Sobic009G073900--Sobic002G081400 Sobic009G073900--Sobic007G135800 Sobic009G073900--Sobic006G213700 Sobic001G499100--Sobic007G135800 Sobic001G499100--Sobic001G509200 Sobic008G149100 Sobic008G149100 Sobic001G499100--Sobic008G149100 Sobic001G499100--Sobic006G213700 Sobic003G228300 Sobic003G228300 Sobic001G499100--Sobic003G228300 Sobic001G499100--Sobic003G409700 Sobic001G499100--Sobic007G108900 Sobic001G499100--Sobic001G393300 Sobic002G047400 Sobic002G047400 Sobic001G499100--Sobic002G047400 Sobic003G094100--Sobic007G108900 Sobic003G094100--Sobic001G509200 Sobic003G094100--Sobic007G135800 Sobic003G094100--Sobic001G393300 Sobic001G283100 Sobic001G283100 Sobic003G094100--Sobic001G283100 Sobic007G157300 Sobic007G157300 Sobic003G094100--Sobic007G157300 Sobic003G094100--Sobic004G103300 Sobic003G094100--Sobic001G180200 Sobic002G298800 Sobic002G298800 Sobic003G094100--Sobic002G298800 Sobic003G409700--Sobic003G341300 Sobic009G133700 Sobic009G133700 Sobic003G409700--Sobic009G133700 Sobic003G409700--Sobic007G135800 Sobic006G235400 Sobic006G235400 Sobic003G409700--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic003G409700--Sobic006G161500 Sobic003G409700--Sobic003G380200 Sobic004G128900 Sobic004G128900 Sobic003G409700--Sobic004G128900 Sobic003G409700--Sobic007G157300 Sobic003G409700--Sobic003G228300 Sobic006G090100--Sobic001G207800 Sobic006G090100--Sobic001G283100 Sobic006G090100--Sobic001G077300 Sobic006G090100--Sobic001G509200 Sobic006G090100--Sobic009G073900 Sobic002G382700 Sobic002G382700 Sobic006G090100--Sobic002G382700 Sobic006G090100--Sobic003G341300 Sobic001G046000 Sobic001G046000 Sobic006G090100--Sobic001G046000 Sobic006G090100--Sobic002G081400
Octagon: transcription factors


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