Gene annotation
Transcriptome id Sobic.001G499100.1
Synonym Sb01g046620
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ABC-2 type transporter domain containing protein, expressed
UniProt C5WXT3
Pfam PF00005 PF01061
Panther DB PTHR19241 PTHR19241:SF286
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G06530 : ABC-2 type transporter family protein
RAP-DB (Rice) LOC_Os03g06139.1 : ABC-2 type transporter domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000720
Brachypodium KQK23568
Barley HORVU4Hr1G072620.9 , HORVU4Hr1G072620.8 , HORVU4Hr1G072620.7 , HORVU4Hr1G072620.6 , HORVU4Hr1G072620.5 , HORVU4Hr1G072620.4 , HORVU4Hr1G072620.3 , HORVU4Hr1G072620.2 , HORVU4Hr1G072620.1 , HORVU4Hr1G072620.24 , HORVU4Hr1G072620.25 , HORVU4Hr1G072620.22 , HORVU4Hr1G072620.23 , HORVU4Hr1G072620.20 , HORVU4Hr1G072620.21 , HORVU4Hr1G072620.17 , HORVU4Hr1G072620.16 , HORVU4Hr1G072620.15 , HORVU4Hr1G072620.14 , HORVU4Hr1G072620.13 , HORVU4Hr1G072620.12 , HORVU4Hr1G072620.11 , HORVU4Hr1G072620.10 , HORVU4Hr1G072620.19 , HORVU4Hr1G072620.18
Wheat TraesCS4B02G272400 , TraesCS4A02G032900 , TraesCS4D02G271500 , TraesCS7B02G280300 , TraesCS7B02G280300 , TraesCS7B02G280300
Populus -


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cDNA sequences
Sobic.001G499100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
2 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
3 Sobic.008G149100 B3 DNA binding domain containing protein, expressed -
4 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
5 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
6 Sobic.003G409700 rieske domain containing protein, expressed -
7 Sobic.007G108900 APE1, putative, expressed -
8 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
9 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
10 Sobic.009G133700 expressed protein -
11 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
13 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
15 Sobic.001G180200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
16 Sobic.007G157300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
17 Sobic.006G090100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K09919: uncharacterized protein
18 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
19 Sobic.003G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G186800 transporter, major facilitator family, putative, expressed -


Gene co-expression network
sample Sobic001G499100 Sobic001G499100 Sobic007G135800 Sobic007G135800 Sobic001G499100--Sobic007G135800 Sobic001G509200 Sobic001G509200 Sobic001G499100--Sobic001G509200 Sobic008G149100 Sobic008G149100 Sobic001G499100--Sobic008G149100 Sobic006G213700 Sobic006G213700 Sobic001G499100--Sobic006G213700 Sobic003G228300 Sobic003G228300 Sobic001G499100--Sobic003G228300 Sobic003G409700 Sobic003G409700 Sobic001G499100--Sobic003G409700 Sobic007G108900 Sobic007G108900 Sobic001G499100--Sobic007G108900 Sobic001G393300 Sobic001G393300 Sobic001G499100--Sobic001G393300 Sobic002G047400 Sobic002G047400 Sobic001G499100--Sobic002G047400 Sobic007G135800--Sobic001G509200 Sobic003G094100 Sobic003G094100 Sobic007G135800--Sobic003G094100 Sobic007G135800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic007G135800--Sobic001G180200 Sobic004G103300 Sobic004G103300 Sobic007G135800--Sobic004G103300 Sobic007G135800--Sobic006G213700 Sobic007G166300 Sobic007G166300 Sobic007G135800--Sobic007G166300 Sobic007G135800--Sobic003G409700 Sobic003G341300 Sobic003G341300 Sobic007G135800--Sobic003G341300 Sobic001G509200--Sobic007G135800 Sobic001G509200--Sobic004G103300 Sobic001G509200--Sobic001G393300 Sobic001G509200--Sobic007G108900 Sobic001G509200--Sobic007G166300 Sobic001G509200--Sobic003G094100 Sobic001G509200--Sobic006G213700 Sobic006G090100 Sobic006G090100 Sobic001G509200--Sobic006G090100 Sobic009G073900 Sobic009G073900 Sobic001G509200--Sobic009G073900 Sobic008G149100--Sobic002G047400 Sobic001G046000 Sobic001G046000 Sobic008G149100--Sobic001G046000 Sobic008G149100--Sobic001G499100 Sobic008G149100--Sobic003G228300 Sobic008G149100--Sobic001G509200 Sobic004G153900 Sobic004G153900 Sobic008G149100--Sobic004G153900 Sobic010G104700 Sobic010G104700 Sobic008G149100--Sobic010G104700 Sobic008G149100--Sobic001G393300 Sobic010G101000 Sobic010G101000 Sobic008G149100--Sobic010G101000 Sobic006G213700--Sobic001G509200 Sobic006G213700--Sobic007G135800 Sobic003G380200 Sobic003G380200 Sobic006G213700--Sobic003G380200 Sobic003G003450 Sobic003G003450 Sobic006G213700--Sobic003G003450 Sobic006G213700--Sobic009G073900 Sobic006G213700--Sobic001G499100 Sobic006G213700--Sobic003G094100 Sobic006G213700--Sobic003G409700 Sobic006G213700--Sobic006G090100 Sobic001G485100 Sobic001G485100 Sobic003G228300--Sobic001G485100 Sobic003G228300--Sobic002G047400 Sobic006G191500 Sobic006G191500 Sobic003G228300--Sobic006G191500 Sobic003G228300--Sobic003G409700 Sobic003G228300--Sobic008G149100 Sobic003G228300--Sobic001G499100 Sobic009G133700 Sobic009G133700 Sobic003G228300--Sobic009G133700 Sobic003G228300--Sobic001G046000 Sobic003G228300--Sobic003G380200 Sobic003G409700--Sobic003G341300 Sobic003G409700--Sobic009G133700 Sobic003G409700--Sobic007G135800 Sobic006G235400 Sobic006G235400 Sobic003G409700--Sobic006G235400 Sobic006G161500 Sobic006G161500 Sobic003G409700--Sobic006G161500 Sobic003G409700--Sobic003G380200 Sobic004G128900 Sobic004G128900 Sobic003G409700--Sobic004G128900 Sobic007G157300 Sobic007G157300 Sobic003G409700--Sobic007G157300 Sobic003G409700--Sobic003G228300 Sobic007G108900--Sobic003G094100 Sobic007G108900--Sobic001G509200 Sobic007G108900--Sobic004G103300 Sobic007G108900--Sobic001G393300 Sobic006G102000 Sobic006G102000 Sobic007G108900--Sobic006G102000 Sobic001G283100 Sobic001G283100 Sobic007G108900--Sobic001G283100 Sobic010G181300 Sobic010G181300 Sobic007G108900--Sobic010G181300 Sobic007G108900--Sobic007G166300 Sobic002G298800 Sobic002G298800 Sobic007G108900--Sobic002G298800 Sobic001G393300--Sobic002G298800 Sobic001G393300--Sobic007G166300 Sobic001G393300--Sobic001G509200 Sobic001G393300--Sobic004G103300 Sobic001G393300--Sobic003G094100 Sobic001G393300--Sobic007G108900 Sobic002G198300 Sobic002G198300 Sobic001G393300--Sobic002G198300 Sobic001G393300--Sobic007G135800 Sobic002G072500 Sobic002G072500 Sobic001G393300--Sobic002G072500 Sobic009G225600 Sobic009G225600 Sobic002G047400--Sobic009G225600 Sobic002G047400--Sobic008G149100 Sobic003G186800 Sobic003G186800 Sobic002G047400--Sobic003G186800 Sobic002G047400--Sobic001G046000 Sobic002G047400--Sobic003G228300 Sobic001G015200 Sobic001G015200 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic002G047400--Sobic001G509200 Sobic002G047400--Sobic001G485100
Octagon: transcription factors


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