Gene annotation
Transcriptome id Sobic.001G220000.2
Synonym Sb01g019340
Functional annotation PPR repeat containing protein, expressed
UniProt A0A219D896
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF718
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08610 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g33700.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a006612
Brachypodium KQJ97087 , PNT67540
Barley HORVU1Hr1G041020.18 , HORVU1Hr1G041020.19 , HORVU1Hr1G041020.10 , HORVU1Hr1G041020.11 , HORVU1Hr1G041020.12 , HORVU1Hr1G041020.13 , HORVU1Hr1G041020.14 , HORVU1Hr1G041020.15 , HORVU1Hr1G041020.16 , HORVU1Hr1G041020.17 , HORVU1Hr1G041020.8 , HORVU1Hr1G041020.9 , HORVU1Hr1G041020.2 , HORVU1Hr1G041020.3 , HORVU1Hr1G041020.1 , HORVU1Hr1G041020.6 , HORVU1Hr1G041020.7 , HORVU1Hr1G041020.5 , HORVU1Hr1G041020.21 , HORVU1Hr1G041020.20 , HORVU1Hr1G041020.22
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G220000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
2 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
3 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
4 Sobic.006G108200 expressed protein -
5 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
7 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
8 Sobic.004G154800 expressed protein -
9 Sobic.002G351600 prenyltransferase, putative, expressed K12501: homogentisate solanesyltransferase
10 Sobic.006G197300 expressed protein -
11 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
12 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
13 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
14 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
15 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
16 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
17 Sobic.003G185600 asp/Glu racemase, putative, expressed -
18 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
20 Sobic.007G124500 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G220000 Sobic001G220000 Sobic004G124400 Sobic004G124400 Sobic001G220000--Sobic004G124400 Sobic004G317700 Sobic004G317700 Sobic001G220000--Sobic004G317700 Sobic004G300100 Sobic004G300100 Sobic001G220000--Sobic004G300100 Sobic006G108200 Sobic006G108200 Sobic001G220000--Sobic006G108200 Sobic002G356900 Sobic002G356900 Sobic001G220000--Sobic002G356900 Sobic010G231500 Sobic010G231500 Sobic001G220000--Sobic010G231500 Sobic001G436400 Sobic001G436400 Sobic001G220000--Sobic001G436400 Sobic004G154800 Sobic004G154800 Sobic001G220000--Sobic004G154800 Sobic002G351600 Sobic002G351600 Sobic001G220000--Sobic002G351600 Sobic005G028800 Sobic005G028800 Sobic004G124400--Sobic005G028800 Sobic006G063900 Sobic006G063900 Sobic004G124400--Sobic006G063900 Sobic007G166300 Sobic007G166300 Sobic004G124400--Sobic007G166300 Sobic001G167900 Sobic001G167900 Sobic004G124400--Sobic001G167900 Sobic004G124400--Sobic010G231500 Sobic002G061900 Sobic002G061900 Sobic004G124400--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic004G124400--Sobic006G097500 Sobic004G124400--Sobic001G436400 Sobic004G359600 Sobic004G359600 Sobic004G124400--Sobic004G359600 Sobic002G081400 Sobic002G081400 Sobic004G317700--Sobic002G081400 Sobic004G317700--Sobic002G356900 Sobic004G317700--Sobic004G300100 Sobic007G087100 Sobic007G087100 Sobic004G317700--Sobic007G087100 Sobic009G073900 Sobic009G073900 Sobic004G317700--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic004G317700--Sobic003G003450 Sobic002G060800 Sobic002G060800 Sobic004G317700--Sobic002G060800 Sobic002G072400 Sobic002G072400 Sobic004G317700--Sobic002G072400 Sobic007G124500 Sobic007G124500 Sobic004G317700--Sobic007G124500 Sobic004G300100--Sobic010G231500 Sobic004G300100--Sobic002G356900 Sobic004G300100--Sobic004G317700 Sobic004G300100--Sobic002G081400 Sobic004G271600 Sobic004G271600 Sobic004G300100--Sobic004G271600 Sobic009G170200 Sobic009G170200 Sobic004G300100--Sobic009G170200 Sobic002G132400 Sobic002G132400 Sobic004G300100--Sobic002G132400 Sobic004G165900 Sobic004G165900 Sobic004G300100--Sobic004G165900 Sobic004G252500 Sobic004G252500 Sobic004G300100--Sobic004G252500 Sobic003G275200 Sobic003G275200 Sobic006G108200--Sobic003G275200 Sobic006G108200--Sobic002G351600 Sobic004G055000 Sobic004G055000 Sobic006G108200--Sobic004G055000 Sobic004G028300 Sobic004G028300 Sobic006G108200--Sobic004G028300 Sobic006G108200--Sobic004G154800 Sobic002G200900 Sobic002G200900 Sobic006G108200--Sobic002G200900 Sobic006G108200--Sobic001G220000 Sobic006G108200--Sobic001G167900 Sobic005G134100 Sobic005G134100 Sobic006G108200--Sobic005G134100 Sobic010G100900 Sobic010G100900 Sobic002G356900--Sobic010G100900 Sobic002G356900--Sobic007G087100 Sobic002G356900--Sobic004G300100 Sobic003G380200 Sobic003G380200 Sobic002G356900--Sobic003G380200 Sobic002G356900--Sobic009G170200 Sobic007G010800 Sobic007G010800 Sobic002G356900--Sobic007G010800 Sobic004G268400 Sobic004G268400 Sobic002G356900--Sobic004G268400 Sobic002G356900--Sobic010G231500 Sobic002G356900--Sobic004G317700 Sobic009G004100 Sobic009G004100 Sobic010G231500--Sobic009G004100 Sobic010G231500--Sobic006G097500 Sobic010G231500--Sobic004G300100 Sobic004G103300 Sobic004G103300 Sobic010G231500--Sobic004G103300 Sobic010G231500--Sobic007G124500 Sobic010G231500--Sobic005G028800 Sobic010G231500--Sobic004G124400 Sobic001G368600 Sobic001G368600 Sobic010G231500--Sobic001G368600 Sobic010G231500--Sobic002G356900 Sobic001G436400--Sobic004G103300 Sobic001G436400--Sobic005G028800 Sobic001G436400--Sobic007G166300 Sobic007G108900 Sobic007G108900 Sobic001G436400--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic001G436400--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic001G436400--Sobic001G015200 Sobic001G393300 Sobic001G393300 Sobic001G436400--Sobic001G393300 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800 Sobic004G154800--Sobic004G055000 Sobic004G154800--Sobic003G275200 Sobic004G154800--Sobic001G167900 Sobic004G154800--Sobic006G108200 Sobic004G154800--Sobic004G124400 Sobic004G154800--Sobic004G028300 Sobic004G154800--Sobic001G220000 Sobic004G154800--Sobic002G351600 Sobic010G062500 Sobic010G062500 Sobic004G154800--Sobic010G062500 Sobic008G050400 Sobic008G050400 Sobic002G351600--Sobic008G050400 Sobic002G272100 Sobic002G272100 Sobic002G351600--Sobic002G272100 Sobic002G351600--Sobic001G167900 Sobic002G401800 Sobic002G401800 Sobic002G351600--Sobic002G401800 Sobic008G172700 Sobic008G172700 Sobic002G351600--Sobic008G172700 Sobic002G351600--Sobic006G108200 Sobic002G351600--Sobic004G055000 Sobic002G351600--Sobic004G124400 Sobic002G351600--Sobic003G275200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.