Gene annotation
Transcriptome id Sobic.004G281900.2
Synonym Sb04g031830, MECPS, ISPF
Functional annotation 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
UniProt A0A1Z5RPE9
Pfam PF02542
Panther DB PTHR32125
NCBI CDD -
KEGG Orthology K01770; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Gene Ontology GO:0016114; terpenoid biosynthetic process GO:00086852-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity


Orthologs (automatic annotation)
TAIR AT1G63970 : isoprenoid F
RAP-DB (Rice) LOC_Os02g45660.1 : 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a032317 , Zm00025a021517 , Zm00025a004558 , Zm00025a053125
Brachypodium KQK00777
Barley HORVU6Hr1G065960.2 , HORVU6Hr1G065960.1
Wheat TraesCS6A02G258500 , TraesCS6D02G239700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G087100 pentatricopeptide, putative, expressed -
2 Sobic.003G328100 expressed protein -
3 Sobic.003G070900 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
4 Sobic.006G102000 PAP fibrillin family domain containing protein, expressed -
5 Sobic.006G197300 expressed protein -
6 Sobic.001G005200 expressed protein -
7 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
8 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
9 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
10 Sobic.009G170200 translation initiation factor IF-2, chloroplast precursor, putative, expressed K02519: infB, translation initiation factor IF-2
11 Sobic.001G286600 PAP fibrillin family domain containing protein, expressed -
12 Sobic.006G155500 expressed protein -
13 Sobic.004G207400 hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed K03526: gcpE, (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
14 Sobic.010G140600 bolA, putative, expressed -
15 Sobic.001G500600 pseudouridine synthase family protein, putative, expressed -
16 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
17 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
18 Sobic.002G200900 alpha/beta hydrolase fold, putative, expressed -
19 Sobic.004G103300 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed -
20 Sobic.004G353100 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1


Gene co-expression network
sample Sobic004G281900 Sobic004G281900 Sobic007G087100 Sobic007G087100 Sobic004G281900--Sobic007G087100 Sobic003G328100 Sobic003G328100 Sobic004G281900--Sobic003G328100 Sobic003G070900 Sobic003G070900 Sobic004G281900--Sobic003G070900 Sobic006G102000 Sobic006G102000 Sobic004G281900--Sobic006G102000 Sobic006G197300 Sobic006G197300 Sobic004G281900--Sobic006G197300 Sobic001G005200 Sobic001G005200 Sobic004G281900--Sobic001G005200 Sobic006G232600 Sobic006G232600 Sobic004G281900--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic004G281900--Sobic001G436400 Sobic002G072400 Sobic002G072400 Sobic004G281900--Sobic002G072400 Sobic003G380200 Sobic003G380200 Sobic007G087100--Sobic003G380200 Sobic009G073900 Sobic009G073900 Sobic007G087100--Sobic009G073900 Sobic009G170200 Sobic009G170200 Sobic007G087100--Sobic009G170200 Sobic001G077300 Sobic001G077300 Sobic007G087100--Sobic001G077300 Sobic002G356900 Sobic002G356900 Sobic007G087100--Sobic002G356900 Sobic007G087100--Sobic006G232600 Sobic009G103000 Sobic009G103000 Sobic007G087100--Sobic009G103000 Sobic003G003450 Sobic003G003450 Sobic007G087100--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic007G087100--Sobic007G135800 Sobic007G169100 Sobic007G169100 Sobic003G328100--Sobic007G169100 Sobic001G118400 Sobic001G118400 Sobic003G328100--Sobic001G118400 Sobic006G155500 Sobic006G155500 Sobic003G328100--Sobic006G155500 Sobic006G140700 Sobic006G140700 Sobic003G328100--Sobic006G140700 Sobic007G107700 Sobic007G107700 Sobic003G328100--Sobic007G107700 Sobic001G286600 Sobic001G286600 Sobic003G328100--Sobic001G286600 Sobic010G231500 Sobic010G231500 Sobic003G328100--Sobic010G231500 Sobic003G328100--Sobic004G281900 Sobic006G097500 Sobic006G097500 Sobic003G328100--Sobic006G097500 Sobic002G133900 Sobic002G133900 Sobic003G070900--Sobic002G133900 Sobic003G287900 Sobic003G287900 Sobic003G070900--Sobic003G287900 Sobic003G070900--Sobic009G170200 Sobic003G094350 Sobic003G094350 Sobic003G070900--Sobic003G094350 Sobic003G070900--Sobic001G118400 Sobic001G500600 Sobic001G500600 Sobic003G070900--Sobic001G500600 Sobic004G353100 Sobic004G353100 Sobic003G070900--Sobic004G353100 Sobic008G074000 Sobic008G074000 Sobic003G070900--Sobic008G074000 Sobic008G006100 Sobic008G006100 Sobic003G070900--Sobic008G006100 Sobic007G108900 Sobic007G108900 Sobic006G102000--Sobic007G108900 Sobic009G237000 Sobic009G237000 Sobic006G102000--Sobic009G237000 Sobic001G289500 Sobic001G289500 Sobic006G102000--Sobic001G289500 Sobic003G094100 Sobic003G094100 Sobic006G102000--Sobic003G094100 Sobic010G181300 Sobic010G181300 Sobic006G102000--Sobic010G181300 Sobic002G275300 Sobic002G275300 Sobic006G102000--Sobic002G275300 Sobic001G491000 Sobic001G491000 Sobic006G102000--Sobic001G491000 Sobic006G207800 Sobic006G207800 Sobic006G102000--Sobic006G207800 Sobic004G303200 Sobic004G303200 Sobic006G102000--Sobic004G303200 Sobic006G197300--Sobic001G500600 Sobic004G336200 Sobic004G336200 Sobic006G197300--Sobic004G336200 Sobic003G232700 Sobic003G232700 Sobic006G197300--Sobic003G232700 Sobic006G197300--Sobic003G094350 Sobic001G516901 Sobic001G516901 Sobic006G197300--Sobic001G516901 Sobic006G197300--Sobic003G070900 Sobic006G197300--Sobic003G287900 Sobic006G197300--Sobic001G436400 Sobic007G103400 Sobic007G103400 Sobic006G197300--Sobic007G103400 Sobic003G378600 Sobic003G378600 Sobic001G005200--Sobic003G378600 Sobic001G128600 Sobic001G128600 Sobic001G005200--Sobic001G128600 Sobic008G102000 Sobic008G102000 Sobic001G005200--Sobic008G102000 Sobic009G140600 Sobic009G140600 Sobic001G005200--Sobic009G140600 Sobic009G175500 Sobic009G175500 Sobic001G005200--Sobic009G175500 Sobic010G245200 Sobic010G245200 Sobic001G005200--Sobic010G245200 Sobic002G233700 Sobic002G233700 Sobic001G005200--Sobic002G233700 Sobic003G387100 Sobic003G387100 Sobic001G005200--Sobic003G387100 Sobic001G122300 Sobic001G122300 Sobic001G005200--Sobic001G122300 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic001G378100 Sobic001G378100 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G233700 Sobic006G233700 Sobic006G232600--Sobic006G233700 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic004G103300 Sobic004G103300 Sobic001G436400--Sobic004G103300 Sobic005G028800 Sobic005G028800 Sobic001G436400--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic001G436400--Sobic007G166300 Sobic001G436400--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic001G436400--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic001G436400--Sobic001G015200 Sobic001G393300 Sobic001G393300 Sobic001G436400--Sobic001G393300 Sobic004G124400 Sobic004G124400 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800 Sobic004G207400 Sobic004G207400 Sobic002G072400--Sobic004G207400 Sobic002G349100 Sobic002G349100 Sobic002G072400--Sobic002G349100 Sobic004G317700 Sobic004G317700 Sobic002G072400--Sobic004G317700 Sobic004G238200 Sobic004G238200 Sobic002G072400--Sobic004G238200 Sobic002G129400 Sobic002G129400 Sobic002G072400--Sobic002G129400 Sobic004G307100 Sobic004G307100 Sobic002G072400--Sobic004G307100 Sobic002G072400--Sobic004G281900 Sobic007G166200 Sobic007G166200 Sobic002G072400--Sobic007G166200 Sobic002G072400--Sobic002G081400
Octagon: transcription factors


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