Gene annotation
Transcriptome id Sobic.003G185600.1
Synonym Sb03g024890
Functional annotation asp/Glu racemase, putative, expressed
UniProt C5XN01
Pfam PF01177
Panther DB PTHR21198 PTHR21198:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006807; nitrogen compound metabolic process


Orthologs (automatic annotation)
TAIR AT1G15410 : aspartate-glutamate racemase family
RAP-DB (Rice) LOC_Os01g37470.1 : asp/Glu racemase, putative, expressed
MaizeGDB (Corn) Zm00025a036461
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
2 Sobic.007G087100 pentatricopeptide, putative, expressed -
3 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
4 Sobic.001G220000 PPR repeat containing protein, expressed -
5 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
6 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
7 Sobic.002G356900 threonyl-tRNA synthetase, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
9 Sobic.003G186800 transporter, major facilitator family, putative, expressed -
10 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase
11 Sobic.004G281900 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed K01770: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
12 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
13 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
14 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
15 Sobic.003G003450 - K01177: beta-amylase
16 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
17 Sobic.004G300100 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
18 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
19 Sobic.009G073900 thioredoxin, putative, expressed -
20 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G185600 Sobic003G185600 Sobic007G010800 Sobic007G010800 Sobic003G185600--Sobic007G010800 Sobic007G087100 Sobic007G087100 Sobic003G185600--Sobic007G087100 Sobic008G088821 Sobic008G088821 Sobic003G185600--Sobic008G088821 Sobic001G220000 Sobic001G220000 Sobic003G185600--Sobic001G220000 Sobic005G028800 Sobic005G028800 Sobic003G185600--Sobic005G028800 Sobic001G436400 Sobic001G436400 Sobic003G185600--Sobic001G436400 Sobic002G356900 Sobic002G356900 Sobic003G185600--Sobic002G356900 Sobic001G015200 Sobic001G015200 Sobic003G185600--Sobic001G015200 Sobic003G186800 Sobic003G186800 Sobic003G185600--Sobic003G186800 Sobic007G010800--Sobic002G356900 Sobic001G018000 Sobic001G018000 Sobic007G010800--Sobic001G018000 Sobic010G100900 Sobic010G100900 Sobic007G010800--Sobic010G100900 Sobic009G040400 Sobic009G040400 Sobic007G010800--Sobic009G040400 Sobic002G351200 Sobic002G351200 Sobic007G010800--Sobic002G351200 Sobic003G003450 Sobic003G003450 Sobic007G010800--Sobic003G003450 Sobic004G268400 Sobic004G268400 Sobic007G010800--Sobic004G268400 Sobic004G317700 Sobic004G317700 Sobic007G010800--Sobic004G317700 Sobic007G010800--Sobic003G186800 Sobic003G380200 Sobic003G380200 Sobic007G087100--Sobic003G380200 Sobic009G073900 Sobic009G073900 Sobic007G087100--Sobic009G073900 Sobic009G170200 Sobic009G170200 Sobic007G087100--Sobic009G170200 Sobic001G077300 Sobic001G077300 Sobic007G087100--Sobic001G077300 Sobic007G087100--Sobic002G356900 Sobic006G232600 Sobic006G232600 Sobic007G087100--Sobic006G232600 Sobic009G103000 Sobic009G103000 Sobic007G087100--Sobic009G103000 Sobic007G087100--Sobic003G003450 Sobic007G135800 Sobic007G135800 Sobic007G087100--Sobic007G135800 Sobic008G088821--Sobic001G015200 Sobic006G140500 Sobic006G140500 Sobic008G088821--Sobic006G140500 Sobic004G028300 Sobic004G028300 Sobic008G088821--Sobic004G028300 Sobic009G119300 Sobic009G119300 Sobic008G088821--Sobic009G119300 Sobic003G103300 Sobic003G103300 Sobic008G088821--Sobic003G103300 Sobic008G088821--Sobic001G018000 Sobic008G088821--Sobic004G268400 Sobic010G101000 Sobic010G101000 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic004G124400 Sobic004G124400 Sobic001G220000--Sobic004G124400 Sobic001G220000--Sobic004G317700 Sobic004G300100 Sobic004G300100 Sobic001G220000--Sobic004G300100 Sobic006G108200 Sobic006G108200 Sobic001G220000--Sobic006G108200 Sobic001G220000--Sobic002G356900 Sobic010G231500 Sobic010G231500 Sobic001G220000--Sobic010G231500 Sobic001G220000--Sobic001G436400 Sobic004G154800 Sobic004G154800 Sobic001G220000--Sobic004G154800 Sobic002G351600 Sobic002G351600 Sobic001G220000--Sobic002G351600 Sobic007G166300 Sobic007G166300 Sobic005G028800--Sobic007G166300 Sobic004G103300 Sobic004G103300 Sobic005G028800--Sobic004G103300 Sobic001G509200 Sobic001G509200 Sobic005G028800--Sobic001G509200 Sobic005G028800--Sobic004G124400 Sobic005G028800--Sobic001G015200 Sobic005G028800--Sobic007G135800 Sobic005G028800--Sobic010G231500 Sobic001G393300 Sobic001G393300 Sobic005G028800--Sobic001G393300 Sobic007G124500 Sobic007G124500 Sobic005G028800--Sobic007G124500 Sobic001G436400--Sobic004G103300 Sobic001G436400--Sobic005G028800 Sobic001G436400--Sobic007G166300 Sobic007G108900 Sobic007G108900 Sobic001G436400--Sobic007G108900 Sobic001G436400--Sobic001G509200 Sobic001G436400--Sobic001G015200 Sobic001G436400--Sobic001G393300 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800 Sobic002G356900--Sobic010G100900 Sobic002G356900--Sobic007G087100 Sobic002G356900--Sobic004G300100 Sobic002G356900--Sobic003G380200 Sobic002G356900--Sobic009G170200 Sobic002G356900--Sobic007G010800 Sobic002G356900--Sobic004G268400 Sobic002G356900--Sobic010G231500 Sobic002G356900--Sobic004G317700 Sobic001G015200--Sobic008G088821 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G015200--Sobic001G509200 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic003G186800--Sobic003G380200 Sobic003G304300 Sobic003G304300 Sobic003G186800--Sobic003G304300 Sobic009G225600 Sobic009G225600 Sobic003G186800--Sobic009G225600 Sobic006G191500 Sobic006G191500 Sobic003G186800--Sobic006G191500 Sobic001G485100 Sobic001G485100 Sobic003G186800--Sobic001G485100 Sobic003G186800--Sobic010G101000 Sobic003G186800--Sobic004G268400 Sobic003G186800--Sobic002G047400 Sobic004G267700 Sobic004G267700 Sobic003G186800--Sobic004G267700
Octagon: transcription factors


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