Gene annotation
Transcriptome id Sobic.002G275100.1
Synonym APRR5, PRR5
Functional annotation response regulator receiver domain containing protein, expressed
UniProt C5X668
Pfam PF06203 PF00072
Panther DB PTHR26402 PTHR26402:SF616
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology K12130; pseudo-response regulator 5
Gene Ontology GO:0005515; protein binding GO:0000160phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT5G24470 : pseudo-response regulator 5
RAP-DB (Rice) LOC_Os09g36220.2 : response regulator receiver domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014435 , Zm00025a047786 , Zm00025a033684
Brachypodium KQJ91171 , KQJ91172
Barley HORVU5Hr1G081620.2 , HORVU5Hr1G081620.4 , HORVU5Hr1G081620.1 , HORVU5Hr1G081620.3
Wheat TraesCS5B02G320500 , TraesCS5D02G326200 , TraesCS5D02G326200 , TraesCS5D02G326200 , TraesCS5A02G320300 , TraesCS5A02G320300
Populus -


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cDNA sequences
Sobic.002G275100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G259100 CCT motif family protein, expressed -
2 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
3 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
4 Sobic.010G100900 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
5 Sobic.010G223200 OsFtsH2 FtsH protease, homologue of AtFtsH2/8, expressed K03798: ftsH, cell division protease FtsH
6 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
7 Sobic.004G271600 region found in RelA/SpoT proteins containing protein, expressed -
8 Sobic.007G006200 NBS-LRR disease resistance protein, putative, expressed -
9 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.006G235300 expressed protein -
11 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
12 Sobic.007G087100 pentatricopeptide, putative, expressed -
13 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
14 Sobic.006G212800 expressed protein -
15 Sobic.002G351200 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.003G304300 expressed protein -
17 Sobic.009G073900 thioredoxin, putative, expressed -
18 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -
19 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
20 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G275100 Sobic002G275100 Sobic009G259100 Sobic009G259100 Sobic002G275100--Sobic009G259100 Sobic003G380200 Sobic003G380200 Sobic002G275100--Sobic003G380200 Sobic004G127800 Sobic004G127800 Sobic002G275100--Sobic004G127800 Sobic010G100900 Sobic010G100900 Sobic002G275100--Sobic010G100900 Sobic010G223200 Sobic010G223200 Sobic002G275100--Sobic010G223200 Sobic002G132400 Sobic002G132400 Sobic002G275100--Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G275100--Sobic004G271600 Sobic007G006200 Sobic007G006200 Sobic002G275100--Sobic007G006200 Sobic006G191500 Sobic006G191500 Sobic002G275100--Sobic006G191500 Sobic009G259100--Sobic002G275100 Sobic009G259100--Sobic003G380200 Sobic004G344600 Sobic004G344600 Sobic009G259100--Sobic004G344600 Sobic004G267700 Sobic004G267700 Sobic009G259100--Sobic004G267700 Sobic009G259100--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic009G259100--Sobic003G304300 Sobic007G121300 Sobic007G121300 Sobic009G259100--Sobic007G121300 Sobic002G351200 Sobic002G351200 Sobic009G259100--Sobic002G351200 Sobic002G161400 Sobic002G161400 Sobic009G259100--Sobic002G161400 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic003G380200--Sobic010G100900 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic007G227100 Sobic007G227100 Sobic004G127800--Sobic007G227100 Sobic001G077300 Sobic001G077300 Sobic004G127800--Sobic001G077300 Sobic006G235300 Sobic006G235300 Sobic004G127800--Sobic006G235300 Sobic004G312600 Sobic004G312600 Sobic004G127800--Sobic004G312600 Sobic006G235400 Sobic006G235400 Sobic004G127800--Sobic006G235400 Sobic006G090100 Sobic006G090100 Sobic004G127800--Sobic006G090100 Sobic001G331600 Sobic001G331600 Sobic004G127800--Sobic001G331600 Sobic004G127800--Sobic006G191500 Sobic009G073900 Sobic009G073900 Sobic004G127800--Sobic009G073900 Sobic010G100900--Sobic002G351200 Sobic010G100900--Sobic003G380200 Sobic010G100900--Sobic002G132400 Sobic010G100900--Sobic004G268400 Sobic010G100900--Sobic003G304300 Sobic010G100900--Sobic004G267700 Sobic010G100900--Sobic004G271600 Sobic002G356900 Sobic002G356900 Sobic010G100900--Sobic002G356900 Sobic004G128900 Sobic004G128900 Sobic010G100900--Sobic004G128900 Sobic002G060800 Sobic002G060800 Sobic010G223200--Sobic002G060800 Sobic002G291800 Sobic002G291800 Sobic010G223200--Sobic002G291800 Sobic010G223200--Sobic007G006200 Sobic010G223200--Sobic002G351200 Sobic010G223200--Sobic004G271600 Sobic004G317700 Sobic004G317700 Sobic010G223200--Sobic004G317700 Sobic010G223200--Sobic002G275100 Sobic010G207100 Sobic010G207100 Sobic010G223200--Sobic010G207100 Sobic010G223200--Sobic002G132400 Sobic002G132400--Sobic004G271600 Sobic002G132400--Sobic010G100900 Sobic002G132400--Sobic002G351200 Sobic001G509200 Sobic001G509200 Sobic002G132400--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic002G132400--Sobic007G135800 Sobic002G132400--Sobic003G380200 Sobic007G124500 Sobic007G124500 Sobic002G132400--Sobic007G124500 Sobic002G132400--Sobic004G268400 Sobic002G408000 Sobic002G408000 Sobic002G132400--Sobic002G408000 Sobic004G271600--Sobic002G132400 Sobic002G081400 Sobic002G081400 Sobic004G271600--Sobic002G081400 Sobic004G271600--Sobic010G100900 Sobic004G271600--Sobic002G351200 Sobic004G271600--Sobic007G124500 Sobic002G072500 Sobic002G072500 Sobic004G271600--Sobic002G072500 Sobic004G271600--Sobic006G090100 Sobic004G271600--Sobic001G509200 Sobic004G271600--Sobic002G060800 Sobic007G006200--Sobic006G191500 Sobic007G006200--Sobic002G161400 Sobic007G006200--Sobic004G127800 Sobic007G006200--Sobic010G223200 Sobic007G006200--Sobic006G235300 Sobic007G006200--Sobic003G380200 Sobic007G006200--Sobic006G090100 Sobic007G006200--Sobic001G077300 Sobic002G119100 Sobic002G119100 Sobic007G006200--Sobic002G119100 Sobic006G191500--Sobic002G161400 Sobic006G191500--Sobic003G380200 Sobic006G191500--Sobic001G485100 Sobic006G191500--Sobic003G304300 Sobic006G191500--Sobic004G128900 Sobic006G191500--Sobic004G344600 Sobic006G191500--Sobic003G186800 Sobic006G191500--Sobic010G100900 Sobic001G046000 Sobic001G046000 Sobic006G191500--Sobic001G046000
Octagon: transcription factors


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