Gene annotation
Transcriptome id Sobic.003G157900.1
Synonym Sb03g013760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycine-rich protein, putative, expressed
UniProt C5XJV8
Pfam -
Panther DB PTHR36751 PTHR36751:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06780 : glycine-rich protein
RAP-DB (Rice) LOC_Os01g24440.1 : glycine-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a024484
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G157900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G090900 heat shock protein-related, putative, expressed -
2 Sobic.006G212800 expressed protein -
3 Sobic.003G380200 SNARE associated Golgi protein, putative, expressed -
4 Sobic.009G103000 ubiquitin family protein, putative, expressed -
5 Sobic.002G136100 genetic modifier, putative, expressed -
6 Sobic.002G275100 response regulator receiver domain containing protein, expressed K12130: pseudo-response regulator 5
7 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.002G162400 potassium channel protein, putative, expressed K05389: potassium channel subfamily K, other eukaryote
9 Sobic.006G213700 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed K13237: peroxisomal 2,4-dienoyl-CoA reductase
10 Sobic.007G135800 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed K06891: ATP-dependent Clp protease adaptor protein ClpS
11 Sobic.001G276300 peptide transporter PTR2, putative, expressed -
12 Sobic.005G062700 nifU, putative, expressed -
13 Sobic.007G006200 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.002G132400 -(PubMedID : 26465154)@expressed protein -
15 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
17 Sobic.006G259600 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
18 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
19 Sobic.009G073900 thioredoxin, putative, expressed -
20 Sobic.007G087100 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G157900 Sobic003G157900 Sobic007G090900 Sobic007G090900 Sobic003G157900--Sobic007G090900 Sobic006G212800 Sobic006G212800 Sobic003G157900--Sobic006G212800 Sobic003G380200 Sobic003G380200 Sobic003G157900--Sobic003G380200 Sobic009G103000 Sobic009G103000 Sobic003G157900--Sobic009G103000 Sobic002G136100 Sobic002G136100 Sobic003G157900--Sobic002G136100 Sobic002G275100 Sobic002G275100 Sobic003G157900--Sobic002G275100 Sobic004G267700 Sobic004G267700 Sobic003G157900--Sobic004G267700 Sobic002G162400 Sobic002G162400 Sobic003G157900--Sobic002G162400 Sobic006G213700 Sobic006G213700 Sobic003G157900--Sobic006G213700 Sobic007G090900--Sobic006G212800 Sobic007G090900--Sobic003G157900 Sobic007G090900--Sobic009G103000 Sobic009G073900 Sobic009G073900 Sobic007G090900--Sobic009G073900 Sobic001G077300 Sobic001G077300 Sobic007G090900--Sobic001G077300 Sobic001G263100 Sobic001G263100 Sobic007G090900--Sobic001G263100 Sobic007G090900--Sobic002G162400 Sobic009G207900 Sobic009G207900 Sobic007G090900--Sobic009G207900 Sobic003G073800 Sobic003G073800 Sobic007G090900--Sobic003G073800 Sobic006G212800--Sobic009G207900 Sobic006G212800--Sobic001G077300 Sobic001G180200 Sobic001G180200 Sobic006G212800--Sobic001G180200 Sobic007G135800 Sobic007G135800 Sobic006G212800--Sobic007G135800 Sobic002G206300 Sobic002G206300 Sobic006G212800--Sobic002G206300 Sobic006G212800--Sobic009G073900 Sobic002G132400 Sobic002G132400 Sobic006G212800--Sobic002G132400 Sobic005G179300 Sobic005G179300 Sobic006G212800--Sobic005G179300 Sobic006G212800--Sobic002G162400 Sobic006G191500 Sobic006G191500 Sobic003G380200--Sobic006G191500 Sobic003G186800 Sobic003G186800 Sobic003G380200--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic003G380200--Sobic010G100900 Sobic003G304300 Sobic003G304300 Sobic003G380200--Sobic003G304300 Sobic003G380200--Sobic004G267700 Sobic001G485100 Sobic001G485100 Sobic003G380200--Sobic001G485100 Sobic007G087100 Sobic007G087100 Sobic003G380200--Sobic007G087100 Sobic002G161400 Sobic002G161400 Sobic003G380200--Sobic002G161400 Sobic004G268400 Sobic004G268400 Sobic003G380200--Sobic004G268400 Sobic009G103000--Sobic007G087100 Sobic009G103000--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic009G103000--Sobic009G170200 Sobic009G103000--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic009G103000--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic009G103000--Sobic006G232600 Sobic009G103000--Sobic006G213700 Sobic001G378100 Sobic001G378100 Sobic009G103000--Sobic001G378100 Sobic009G103000--Sobic006G212800 Sobic004G154400 Sobic004G154400 Sobic002G136100--Sobic004G154400 Sobic002G136100--Sobic006G212800 Sobic002G136100--Sobic009G207900 Sobic010G058200 Sobic010G058200 Sobic002G136100--Sobic010G058200 Sobic001G286600 Sobic001G286600 Sobic002G136100--Sobic001G286600 Sobic003G328100 Sobic003G328100 Sobic002G136100--Sobic003G328100 Sobic009G062400 Sobic009G062400 Sobic002G136100--Sobic009G062400 Sobic002G136100--Sobic003G157900 Sobic007G015500 Sobic007G015500 Sobic002G136100--Sobic007G015500 Sobic009G259100 Sobic009G259100 Sobic002G275100--Sobic009G259100 Sobic002G275100--Sobic003G380200 Sobic004G127800 Sobic004G127800 Sobic002G275100--Sobic004G127800 Sobic002G275100--Sobic010G100900 Sobic010G223200 Sobic010G223200 Sobic002G275100--Sobic010G223200 Sobic002G275100--Sobic002G132400 Sobic004G271600 Sobic004G271600 Sobic002G275100--Sobic004G271600 Sobic007G006200 Sobic007G006200 Sobic002G275100--Sobic007G006200 Sobic002G275100--Sobic006G191500 Sobic004G267700--Sobic004G268400 Sobic004G267700--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic004G267700--Sobic010G101000 Sobic007G016600 Sobic007G016600 Sobic004G267700--Sobic007G016600 Sobic004G267700--Sobic003G380200 Sobic002G351200 Sobic002G351200 Sobic004G267700--Sobic002G351200 Sobic001G018000 Sobic001G018000 Sobic004G267700--Sobic001G018000 Sobic004G267700--Sobic003G186800 Sobic004G267700--Sobic010G100900 Sobic003G341300 Sobic003G341300 Sobic002G162400--Sobic003G341300 Sobic002G162400--Sobic001G263100 Sobic002G162400--Sobic001G180200 Sobic002G162400--Sobic002G206300 Sobic010G231300 Sobic010G231300 Sobic002G162400--Sobic010G231300 Sobic006G235400 Sobic006G235400 Sobic002G162400--Sobic006G235400 Sobic002G162400--Sobic001G077300 Sobic001G258200 Sobic001G258200 Sobic002G162400--Sobic001G258200 Sobic008G129900 Sobic008G129900 Sobic002G162400--Sobic008G129900 Sobic001G509200 Sobic001G509200 Sobic006G213700--Sobic001G509200 Sobic006G213700--Sobic007G135800 Sobic006G213700--Sobic003G380200 Sobic006G213700--Sobic003G003450 Sobic006G213700--Sobic009G073900 Sobic001G499100 Sobic001G499100 Sobic006G213700--Sobic001G499100 Sobic003G094100 Sobic003G094100 Sobic006G213700--Sobic003G094100 Sobic003G409700 Sobic003G409700 Sobic006G213700--Sobic003G409700 Sobic006G090100 Sobic006G090100 Sobic006G213700--Sobic006G090100
Octagon: transcription factors


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