Gene annotation
Transcriptome id Sobic.005G172400.2,Sobic.005G172400.1
Synonym FIB4, Sb05g023220
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PAP fibrillin family domain containing protein, expressed
UniProt C5Y5G7
Pfam PF04755
Panther DB PTHR31906 PTHR31906:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23400 : Plastid-lipid associated protein PAP / fibrillin family protein
RAP-DB (Rice) LOC_Os11g38260.1 : PAP fibrillin family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015839
Brachypodium KQJ87970
Barley -
Wheat TraesCS2A02G145900 , TraesCS2D02G150500 , TraesCS2B02G171300
Populus -


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cDNA sequences
Sobic.005G172400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G104600 expressed protein -
2 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
3 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
4 Sobic.005G062700 nifU, putative, expressed -
5 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
6 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
7 Sobic.001G289500 kinase, pfkB family, putative, expressed -
8 Sobic.001G317800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
10 Sobic.007G181400 TraB family protein, putative, expressed -
11 Sobic.002G370600 - -
12 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
13 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
14 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
15 Sobic.001G500700 expressed protein -
16 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
17 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
18 Sobic.001G104700 expressed protein -
19 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -


Gene co-expression network
sample Sobic005G172400 Sobic005G172400 Sobic001G104600 Sobic001G104600 Sobic005G172400--Sobic001G104600 Sobic001G015200 Sobic001G015200 Sobic005G172400--Sobic001G015200 Sobic003G103300 Sobic003G103300 Sobic005G172400--Sobic003G103300 Sobic005G062700 Sobic005G062700 Sobic005G172400--Sobic005G062700 Sobic010G101000 Sobic010G101000 Sobic005G172400--Sobic010G101000 Sobic004G305900 Sobic004G305900 Sobic005G172400--Sobic004G305900 Sobic001G289500 Sobic001G289500 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic002G047400 Sobic002G047400 Sobic005G172400--Sobic002G047400 Sobic001G104700 Sobic001G104700 Sobic001G104600--Sobic001G104700 Sobic001G104600--Sobic001G015200 Sobic007G046950 Sobic007G046950 Sobic001G104600--Sobic007G046950 Sobic001G411100 Sobic001G411100 Sobic001G104600--Sobic001G411100 Sobic002G030900 Sobic002G030900 Sobic001G104600--Sobic002G030900 Sobic001G104600--Sobic003G103300 Sobic001G104600--Sobic005G172400 Sobic002G370600 Sobic002G370600 Sobic001G104600--Sobic002G370600 Sobic001G104600--Sobic010G101000 Sobic008G088821 Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic003G103300--Sobic001G015200 Sobic003G103300--Sobic008G088821 Sobic004G268400 Sobic004G268400 Sobic003G103300--Sobic004G268400 Sobic003G103300--Sobic010G101000 Sobic001G018000 Sobic001G018000 Sobic003G103300--Sobic001G018000 Sobic003G103300--Sobic001G411100 Sobic003G103300--Sobic001G104700 Sobic002G060800 Sobic002G060800 Sobic003G103300--Sobic002G060800 Sobic002G351200 Sobic002G351200 Sobic003G103300--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic005G062700--Sobic009G225600 Sobic005G062700--Sobic001G015200 Sobic005G062700--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic005G062700--Sobic001G303200 Sobic006G221000 Sobic006G221000 Sobic005G062700--Sobic006G221000 Sobic005G062700--Sobic001G509200 Sobic005G062700--Sobic005G172400 Sobic007G108900 Sobic007G108900 Sobic005G062700--Sobic007G108900 Sobic005G062700--Sobic004G305900 Sobic004G267700 Sobic004G267700 Sobic010G101000--Sobic004G267700 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic003G186800 Sobic003G186800 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G101000--Sobic003G304300 Sobic004G305900--Sobic001G015200 Sobic004G305900--Sobic008G088821 Sobic004G305900--Sobic003G103300 Sobic005G028800 Sobic005G028800 Sobic004G305900--Sobic005G028800 Sobic004G305900--Sobic006G140500 Sobic001G167900 Sobic001G167900 Sobic004G305900--Sobic001G167900 Sobic004G305900--Sobic007G166300 Sobic004G305900--Sobic010G101000 Sobic004G028300 Sobic004G028300 Sobic004G305900--Sobic004G028300 Sobic003G005000 Sobic003G005000 Sobic001G289500--Sobic003G005000 Sobic001G491000 Sobic001G491000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic006G238200 Sobic006G238200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic010G181300 Sobic010G181300 Sobic001G289500--Sobic010G181300 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic002G275300 Sobic002G275300 Sobic001G289500--Sobic002G275300 Sobic001G317800--Sobic001G393300 Sobic001G180200 Sobic001G180200 Sobic001G317800--Sobic001G180200 Sobic001G317800--Sobic003G094100 Sobic009G133700 Sobic009G133700 Sobic001G317800--Sobic009G133700 Sobic007G135800 Sobic007G135800 Sobic001G317800--Sobic007G135800 Sobic002G298800 Sobic002G298800 Sobic001G317800--Sobic002G298800 Sobic001G317800--Sobic001G509200 Sobic001G499100 Sobic001G499100 Sobic001G317800--Sobic001G499100 Sobic008G149100 Sobic008G149100 Sobic001G317800--Sobic008G149100 Sobic002G047400--Sobic009G225600 Sobic002G047400--Sobic008G149100 Sobic002G047400--Sobic003G186800 Sobic001G046000 Sobic001G046000 Sobic002G047400--Sobic001G046000 Sobic003G228300 Sobic003G228300 Sobic002G047400--Sobic003G228300 Sobic002G047400--Sobic001G015200 Sobic002G047400--Sobic010G101000 Sobic002G047400--Sobic001G509200 Sobic001G485100 Sobic001G485100 Sobic002G047400--Sobic001G485100
Octagon: transcription factors


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