Gene annotation
Transcriptome id Sobic.001G104600.1
Synonym Sb01g009340
Functional annotation expressed protein
UniProt C5WM02
Pfam PF13911
Panther DB PTHR28630 PTHR28630:SF4
NCBI CDD KOG4498; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65840 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os03g51960.1 : expressed protein
MaizeGDB (Corn) Zm00025a007999
Brachypodium KQK13400
Barley HORVU4Hr1G072810.1 , HORVU4Hr1G010120.8 , HORVU4Hr1G010120.9 , HORVU4Hr1G010120.4 , HORVU4Hr1G010120.6 , HORVU4Hr1G010120.3 , HORVU4Hr1G010120.7 , HORVU4Hr1G010120.1 , HORVU4Hr1G072810.2
Wheat TraesCS4D02G059700 , TraesCS4A02G254600 , TraesCS4B02G060100
Populus -


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cDNA sequences
Sobic.001G104600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G104700 expressed protein -
2 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
3 Sobic.007G046950 - -
4 Sobic.001G411100 expressed protein -
5 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
7 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
8 Sobic.002G370600 - -
9 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
10 Sobic.001G289500 kinase, pfkB family, putative, expressed -
11 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
12 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
13 Sobic.007G108900 APE1, putative, expressed -
14 Sobic.001G509200 "similar to 9,10-9',10' carotenoid cleavage dioxygenase 1"(PubMedID : 29862293)@carotenoid cleavage dioxygenase, putative, expressed K11159: carotenoid cleavage oxygenase
15 Sobic.007G124500 methyltransferase, putative, expressed -
16 Sobic.002G244400 EF hand family protein, expressed -
17 Sobic.001G393300 HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed -
18 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
19 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
20 Sobic.007G181400 TraB family protein, putative, expressed -


Gene co-expression network
sample Sobic001G104600 Sobic001G104600 Sobic001G104700 Sobic001G104700 Sobic001G104600--Sobic001G104700 Sobic001G015200 Sobic001G015200 Sobic001G104600--Sobic001G015200 Sobic007G046950 Sobic007G046950 Sobic001G104600--Sobic007G046950 Sobic001G411100 Sobic001G411100 Sobic001G104600--Sobic001G411100 Sobic002G030900 Sobic002G030900 Sobic001G104600--Sobic002G030900 Sobic003G103300 Sobic003G103300 Sobic001G104600--Sobic003G103300 Sobic005G172400 Sobic005G172400 Sobic001G104600--Sobic005G172400 Sobic002G370600 Sobic002G370600 Sobic001G104600--Sobic002G370600 Sobic010G101000 Sobic010G101000 Sobic001G104600--Sobic010G101000 Sobic001G104700--Sobic001G411100 Sobic001G104700--Sobic002G030900 Sobic001G104700--Sobic001G104600 Sobic001G104700--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic001G104700--Sobic001G018000 Sobic001G104700--Sobic010G101000 Sobic004G125800 Sobic004G125800 Sobic001G104700--Sobic004G125800 Sobic004G268400 Sobic004G268400 Sobic001G104700--Sobic004G268400 Sobic004G267700 Sobic004G267700 Sobic001G104700--Sobic004G267700 Sobic008G088821 Sobic008G088821 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic006G140500 Sobic006G140500 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic009G119300 Sobic009G119300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic007G046950--Sobic001G104600 Sobic007G046950--Sobic001G015200 Sobic007G046950--Sobic010G101000 Sobic007G046950--Sobic002G030900 Sobic002G060800 Sobic002G060800 Sobic007G046950--Sobic002G060800 Sobic007G046950--Sobic001G104700 Sobic007G046950--Sobic002G047400 Sobic007G046950--Sobic003G103300 Sobic007G046950--Sobic004G125800 Sobic007G124500 Sobic007G124500 Sobic001G411100--Sobic007G124500 Sobic001G411100--Sobic001G018000 Sobic001G411100--Sobic002G030900 Sobic001G411100--Sobic001G104700 Sobic001G411100--Sobic004G268400 Sobic001G411100--Sobic010G101000 Sobic001G411100--Sobic003G103300 Sobic002G351200 Sobic002G351200 Sobic001G411100--Sobic002G351200 Sobic001G411100--Sobic004G267700 Sobic002G030900--Sobic010G101000 Sobic002G030900--Sobic001G411100 Sobic002G030900--Sobic001G018000 Sobic002G030900--Sobic004G268400 Sobic002G030900--Sobic001G104700 Sobic002G030900--Sobic004G267700 Sobic003G186800 Sobic003G186800 Sobic002G030900--Sobic003G186800 Sobic002G030900--Sobic007G124500 Sobic002G030900--Sobic008G088821 Sobic003G103300--Sobic001G015200 Sobic003G103300--Sobic008G088821 Sobic003G103300--Sobic004G268400 Sobic003G103300--Sobic010G101000 Sobic003G103300--Sobic001G018000 Sobic003G103300--Sobic001G411100 Sobic003G103300--Sobic001G104700 Sobic003G103300--Sobic002G060800 Sobic003G103300--Sobic002G351200 Sobic005G172400--Sobic001G104600 Sobic005G172400--Sobic001G015200 Sobic005G172400--Sobic003G103300 Sobic005G062700 Sobic005G062700 Sobic005G172400--Sobic005G062700 Sobic005G172400--Sobic010G101000 Sobic004G305900 Sobic004G305900 Sobic005G172400--Sobic004G305900 Sobic001G289500 Sobic001G289500 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic005G172400--Sobic002G047400 Sobic004G305800 Sobic004G305800 Sobic002G370600--Sobic004G305800 Sobic001G491000 Sobic001G491000 Sobic002G370600--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic002G370600--Sobic010G181300 Sobic006G238200 Sobic006G238200 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic003G370000 Sobic003G370000 Sobic002G370600--Sobic003G370000 Sobic009G043000 Sobic009G043000 Sobic002G370600--Sobic009G043000 Sobic010G101000--Sobic004G267700 Sobic009G225600 Sobic009G225600 Sobic010G101000--Sobic009G225600 Sobic010G101000--Sobic002G030900 Sobic010G101000--Sobic003G186800 Sobic010G101000--Sobic002G351200 Sobic010G101000--Sobic001G018000 Sobic010G104700 Sobic010G104700 Sobic010G101000--Sobic010G104700 Sobic010G101000--Sobic004G268400 Sobic003G304300 Sobic003G304300 Sobic010G101000--Sobic003G304300
Octagon: transcription factors


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