Gene annotation
Transcriptome id Sobic.002G244400.1
Synonym Sb02g028130
Functional annotation EF hand family protein, expressed
UniProt C5X3U6
Pfam PF13202
Panther DB PTHR10891 PTHR10891:SF577
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT2G44310 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os09g30490.1 : EF hand family protein, expressed
MaizeGDB (Corn) Zm00025a047422 , Zm00025a005031
Brachypodium -
Barley HORVU5Hr1G072700.3 , HORVU5Hr1G072700.1 , HORVU5Hr1G072700.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G104600 expressed protein -
2 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
3 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
4 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
5 Sobic.001G411100 expressed protein -
6 Sobic.007G169100 glutathione S-transferase, N-terminal domain containing protein, expressed -
7 Sobic.002G030900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.004G028300 expressed protein -
9 Sobic.005G172400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PAP fibrillin family domain containing protein, expressed -
10 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.001G029600 -(PubMedID : 26465154)@expressed protein -
12 Sobic.004G359600 cell division inhibitor, putative, expressed K07071: uncharacterized protein
13 Sobic.001G104700 expressed protein -
14 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
15 Sobic.010G101000 peptide methionine sulfoxide reductase msrB, putative, expressed K07305: peptide-methionine (R)-S-oxide reductase
16 Sobic.002G061900 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
17 Sobic.006G265900 thioredoxin, putative, expressed K03671: thioredoxin 1
18 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
19 Sobic.006G097500 zeaxanthin epoxidase, chloroplast precursor, putative, expressed K09838: ZEP, zeaxanthin epoxidase
20 Sobic.010G231500 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant


Gene co-expression network
sample Sobic002G244400 Sobic002G244400 Sobic001G104600 Sobic001G104600 Sobic002G244400--Sobic001G104600 Sobic008G088821 Sobic008G088821 Sobic002G244400--Sobic008G088821 Sobic003G103300 Sobic003G103300 Sobic002G244400--Sobic003G103300 Sobic001G015200 Sobic001G015200 Sobic002G244400--Sobic001G015200 Sobic001G411100 Sobic001G411100 Sobic002G244400--Sobic001G411100 Sobic007G169100 Sobic007G169100 Sobic002G244400--Sobic007G169100 Sobic002G030900 Sobic002G030900 Sobic002G244400--Sobic002G030900 Sobic004G028300 Sobic004G028300 Sobic002G244400--Sobic004G028300 Sobic005G172400 Sobic005G172400 Sobic002G244400--Sobic005G172400 Sobic001G104700 Sobic001G104700 Sobic001G104600--Sobic001G104700 Sobic001G104600--Sobic001G015200 Sobic007G046950 Sobic007G046950 Sobic001G104600--Sobic007G046950 Sobic001G104600--Sobic001G411100 Sobic001G104600--Sobic002G030900 Sobic001G104600--Sobic003G103300 Sobic001G104600--Sobic005G172400 Sobic002G370600 Sobic002G370600 Sobic001G104600--Sobic002G370600 Sobic010G101000 Sobic010G101000 Sobic001G104600--Sobic010G101000 Sobic008G088821--Sobic001G015200 Sobic006G140500 Sobic006G140500 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic009G119300 Sobic009G119300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic001G018000 Sobic001G018000 Sobic008G088821--Sobic001G018000 Sobic004G268400 Sobic004G268400 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic008G088821--Sobic002G030900 Sobic003G103300--Sobic001G015200 Sobic003G103300--Sobic008G088821 Sobic003G103300--Sobic004G268400 Sobic003G103300--Sobic010G101000 Sobic003G103300--Sobic001G018000 Sobic003G103300--Sobic001G411100 Sobic003G103300--Sobic001G104700 Sobic002G060800 Sobic002G060800 Sobic003G103300--Sobic002G060800 Sobic002G351200 Sobic002G351200 Sobic003G103300--Sobic002G351200 Sobic001G015200--Sobic008G088821 Sobic007G166300 Sobic007G166300 Sobic001G015200--Sobic007G166300 Sobic001G015200--Sobic003G103300 Sobic001G015200--Sobic006G140500 Sobic002G047400 Sobic002G047400 Sobic001G015200--Sobic002G047400 Sobic001G509200 Sobic001G509200 Sobic001G015200--Sobic001G509200 Sobic001G393300 Sobic001G393300 Sobic001G015200--Sobic001G393300 Sobic001G015200--Sobic009G119300 Sobic001G015200--Sobic010G101000 Sobic007G124500 Sobic007G124500 Sobic001G411100--Sobic007G124500 Sobic001G411100--Sobic001G018000 Sobic001G411100--Sobic002G030900 Sobic001G411100--Sobic001G104700 Sobic001G411100--Sobic004G268400 Sobic001G411100--Sobic010G101000 Sobic001G411100--Sobic003G103300 Sobic001G411100--Sobic002G351200 Sobic004G267700 Sobic004G267700 Sobic001G411100--Sobic004G267700 Sobic003G328100 Sobic003G328100 Sobic007G169100--Sobic003G328100 Sobic002G061900 Sobic002G061900 Sobic007G169100--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic007G169100--Sobic006G097500 Sobic006G265900 Sobic006G265900 Sobic007G169100--Sobic006G265900 Sobic010G231500 Sobic010G231500 Sobic007G169100--Sobic010G231500 Sobic006G140700 Sobic006G140700 Sobic007G169100--Sobic006G140700 Sobic006G063900 Sobic006G063900 Sobic007G169100--Sobic006G063900 Sobic005G028800 Sobic005G028800 Sobic007G169100--Sobic005G028800 Sobic006G155500 Sobic006G155500 Sobic007G169100--Sobic006G155500 Sobic002G030900--Sobic010G101000 Sobic002G030900--Sobic001G411100 Sobic002G030900--Sobic001G018000 Sobic002G030900--Sobic004G268400 Sobic002G030900--Sobic001G104700 Sobic002G030900--Sobic004G267700 Sobic003G186800 Sobic003G186800 Sobic002G030900--Sobic003G186800 Sobic002G030900--Sobic007G124500 Sobic002G030900--Sobic008G088821 Sobic004G028300--Sobic008G088821 Sobic001G167900 Sobic001G167900 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G359600 Sobic004G359600 Sobic004G028300--Sobic004G359600 Sobic006G108200 Sobic006G108200 Sobic004G028300--Sobic006G108200 Sobic005G172400--Sobic001G104600 Sobic005G172400--Sobic001G015200 Sobic005G172400--Sobic003G103300 Sobic005G062700 Sobic005G062700 Sobic005G172400--Sobic005G062700 Sobic005G172400--Sobic010G101000 Sobic004G305900 Sobic004G305900 Sobic005G172400--Sobic004G305900 Sobic001G289500 Sobic001G289500 Sobic005G172400--Sobic001G289500 Sobic001G317800 Sobic001G317800 Sobic005G172400--Sobic001G317800 Sobic005G172400--Sobic002G047400
Octagon: transcription factors


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