Gene annotation
Transcriptome id Sobic.003G370000.1
Synonym Sb03g041100, PSBS, NPQ4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chlorophyll A-B binding protein, putative, expressed
UniProt C5XR87
Pfam PF00504
Panther DB PTHR14154 PTHR14154:SF10
NCBI CDD -
KEGG Orthology K03542; photosystem II 22kDa protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G44575 : Chlorophyll A-B binding family protein
RAP-DB (Rice) LOC_Os01g64960.1 : chlorophyll A-B binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a026669
Brachypodium KQK10798
Barley HORVU3Hr1G082730.1 , HORVU3Hr1G082730.2 , HORVU3Hr1G082740.2 , HORVU3Hr1G082740.5 , HORVU3Hr1G082740.1 , HORVU3Hr1G082740.4 , HORVU3Hr1G082740.3
Wheat TraesCS3D02G374200 , TraesCS3B02G413700 , TraesCS3A02G381000
Populus -


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cDNA sequences
Sobic.003G370000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
2 Sobic.001G289500 kinase, pfkB family, putative, expressed -
3 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
4 Sobic.002G370600 - -
5 Sobic.002G314300 OsAPRL1 adenosine 5\'-phosphosulfate reductase-like OsAPRL1, expressed K05907: adenylyl-sulfate reductase (glutathione)
6 Sobic.004G305800 expressed protein -
7 Sobic.001G020100 expressed protein -
8 Sobic.004G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed K00703: starch synthase
9 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
10 Sobic.008G064500 TPR domain protein, putative, expressed -
11 Sobic.005G200200 expressed protein -
12 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
13 Sobic.009G043000 thioredoxin, putative, expressed -
14 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
15 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
16 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
17 Sobic.010G188300 fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
18 Sobic.010G201700 GA16396-PA, putative, expressed -
19 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
20 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -


Gene co-expression network
sample Sobic003G370000 Sobic003G370000 Sobic007G161500 Sobic007G161500 Sobic003G370000--Sobic007G161500 Sobic001G289500 Sobic001G289500 Sobic003G370000--Sobic001G289500 Sobic005G056400 Sobic005G056400 Sobic003G370000--Sobic005G056400 Sobic002G370600 Sobic002G370600 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic004G305800 Sobic004G305800 Sobic003G370000--Sobic004G305800 Sobic001G020100 Sobic001G020100 Sobic003G370000--Sobic001G020100 Sobic004G238600 Sobic004G238600 Sobic003G370000--Sobic004G238600 Sobic001G076900 Sobic001G076900 Sobic003G370000--Sobic001G076900 Sobic007G161500--Sobic005G056400 Sobic003G127800 Sobic003G127800 Sobic007G161500--Sobic003G127800 Sobic010G188300 Sobic010G188300 Sobic007G161500--Sobic010G188300 Sobic001G329400 Sobic001G329400 Sobic007G161500--Sobic001G329400 Sobic007G161500--Sobic003G370000 Sobic001G491000 Sobic001G491000 Sobic007G161500--Sobic001G491000 Sobic007G161500--Sobic001G289500 Sobic007G161500--Sobic004G305800 Sobic003G024300 Sobic003G024300 Sobic007G161500--Sobic003G024300 Sobic003G005000 Sobic003G005000 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic006G238200 Sobic006G238200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic010G181300 Sobic010G181300 Sobic001G289500--Sobic010G181300 Sobic007G108900 Sobic007G108900 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic002G275300 Sobic002G275300 Sobic001G289500--Sobic002G275300 Sobic005G056400--Sobic007G161500 Sobic005G056400--Sobic004G305800 Sobic005G056400--Sobic003G127800 Sobic005G056400--Sobic003G370000 Sobic005G056400--Sobic010G188300 Sobic005G056400--Sobic001G076900 Sobic005G056400--Sobic001G491000 Sobic005G056400--Sobic001G329400 Sobic006G057866 Sobic006G057866 Sobic005G056400--Sobic006G057866 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic002G370600--Sobic003G370000 Sobic009G043000 Sobic009G043000 Sobic002G370600--Sobic009G043000 Sobic002G314300--Sobic007G161500 Sobic002G314300--Sobic003G370000 Sobic002G314300--Sobic001G289500 Sobic008G064500 Sobic008G064500 Sobic002G314300--Sobic008G064500 Sobic002G314300--Sobic005G056400 Sobic002G306800 Sobic002G306800 Sobic002G314300--Sobic002G306800 Sobic002G314300--Sobic001G020100 Sobic009G129300 Sobic009G129300 Sobic002G314300--Sobic009G129300 Sobic002G314300--Sobic001G491000 Sobic004G305800--Sobic002G370600 Sobic004G305800--Sobic001G491000 Sobic004G305800--Sobic005G056400 Sobic004G305800--Sobic009G129300 Sobic004G268000 Sobic004G268000 Sobic004G305800--Sobic004G268000 Sobic010G201700 Sobic010G201700 Sobic004G305800--Sobic010G201700 Sobic004G305800--Sobic007G161500 Sobic003G431900 Sobic003G431900 Sobic004G305800--Sobic003G431900 Sobic004G305800--Sobic006G238200 Sobic001G020100--Sobic001G491000 Sobic001G020100--Sobic003G370000 Sobic001G020100--Sobic001G289500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic001G020100--Sobic005G056400 Sobic001G020100--Sobic001G076900 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic008G053200 Sobic008G053200 Sobic004G238600--Sobic008G053200 Sobic004G283100 Sobic004G283100 Sobic004G238600--Sobic004G283100 Sobic004G238600--Sobic004G305800 Sobic004G238600--Sobic003G370000 Sobic004G238600--Sobic002G370600 Sobic004G238600--Sobic007G161500 Sobic004G238600--Sobic001G329400 Sobic004G272100 Sobic004G272100 Sobic004G238600--Sobic004G272100 Sobic001G519800 Sobic001G519800 Sobic004G238600--Sobic001G519800 Sobic001G076900--Sobic005G056400 Sobic001G076900--Sobic003G370000 Sobic010G095000 Sobic010G095000 Sobic001G076900--Sobic010G095000 Sobic001G076900--Sobic001G020100 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic001G076900--Sobic002G370600 Sobic001G076900--Sobic004G283100
Octagon: transcription factors


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