Gene annotation
Transcriptome id Sobic.001G020100.4,Sobic.001G020100.3
Synonym Sb01g001940
Functional annotation expressed protein
UniProt C5WT40
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT4G09620 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os03g62240.1 : expressed protein
MaizeGDB (Corn) Zm00025a008962
Brachypodium -
Barley HORVU5Hr1G118680.3 , HORVU5Hr1G118680.2 , HORVU5Hr1G118680.1
Wheat TraesCS5D02G518800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
2 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
3 Sobic.001G289500 kinase, pfkB family, putative, expressed -
4 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
5 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
6 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
7 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.001G100000 glucose-1-phosphate adenylyltransferase large subunit, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
10 Sobic.008G188600 glyoxalase family protein, putative, expressed -
11 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
12 Sobic.004G268000 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
13 Sobic.007G173800 uncharacterized protein ycf39, putative, expressed -
14 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
15 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
16 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
17 Sobic.010G201700 GA16396-PA, putative, expressed -
18 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
19 Sobic.002G370600 - -
20 Sobic.006G077400 PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic001G020100 Sobic001G020100 Sobic001G491000 Sobic001G491000 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G289500 Sobic001G289500 Sobic001G020100--Sobic001G289500 Sobic007G161500 Sobic007G161500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic005G056400 Sobic005G056400 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic006G238200 Sobic006G238200 Sobic001G020100--Sobic006G238200 Sobic001G100000 Sobic001G100000 Sobic001G020100--Sobic001G100000 Sobic001G491000--Sobic006G238200 Sobic010G181300 Sobic010G181300 Sobic001G491000--Sobic010G181300 Sobic001G491000--Sobic001G100000 Sobic002G275300 Sobic002G275300 Sobic001G491000--Sobic002G275300 Sobic001G491000--Sobic001G289500 Sobic009G129300 Sobic009G129300 Sobic001G491000--Sobic009G129300 Sobic002G370600 Sobic002G370600 Sobic001G491000--Sobic002G370600 Sobic009G237100 Sobic009G237100 Sobic001G491000--Sobic009G237100 Sobic004G305800 Sobic004G305800 Sobic001G491000--Sobic004G305800 Sobic003G370000--Sobic007G161500 Sobic003G370000--Sobic001G289500 Sobic003G370000--Sobic005G056400 Sobic003G370000--Sobic002G370600 Sobic002G314300 Sobic002G314300 Sobic003G370000--Sobic002G314300 Sobic003G370000--Sobic004G305800 Sobic003G370000--Sobic001G020100 Sobic004G238600 Sobic004G238600 Sobic003G370000--Sobic004G238600 Sobic003G370000--Sobic001G076900 Sobic003G005000 Sobic003G005000 Sobic001G289500--Sobic003G005000 Sobic001G289500--Sobic001G491000 Sobic004G202200 Sobic004G202200 Sobic001G289500--Sobic004G202200 Sobic001G289500--Sobic006G238200 Sobic006G102000 Sobic006G102000 Sobic001G289500--Sobic006G102000 Sobic001G289500--Sobic010G181300 Sobic007G108900 Sobic007G108900 Sobic001G289500--Sobic007G108900 Sobic003G094100 Sobic003G094100 Sobic001G289500--Sobic003G094100 Sobic001G289500--Sobic002G275300 Sobic007G161500--Sobic005G056400 Sobic003G127800 Sobic003G127800 Sobic007G161500--Sobic003G127800 Sobic010G188300 Sobic010G188300 Sobic007G161500--Sobic010G188300 Sobic001G329400 Sobic001G329400 Sobic007G161500--Sobic001G329400 Sobic007G161500--Sobic003G370000 Sobic007G161500--Sobic001G491000 Sobic007G161500--Sobic001G289500 Sobic007G161500--Sobic004G305800 Sobic003G024300 Sobic003G024300 Sobic007G161500--Sobic003G024300 Sobic006G130300--Sobic001G100000 Sobic006G130300--Sobic006G238200 Sobic007G140800 Sobic007G140800 Sobic006G130300--Sobic007G140800 Sobic006G130300--Sobic001G020100 Sobic006G130300--Sobic001G329400 Sobic006G130300--Sobic001G491000 Sobic004G283100 Sobic004G283100 Sobic006G130300--Sobic004G283100 Sobic008G115900 Sobic008G115900 Sobic006G130300--Sobic008G115900 Sobic006G207800 Sobic006G207800 Sobic006G130300--Sobic006G207800 Sobic005G056400--Sobic007G161500 Sobic005G056400--Sobic004G305800 Sobic005G056400--Sobic003G127800 Sobic005G056400--Sobic003G370000 Sobic005G056400--Sobic010G188300 Sobic005G056400--Sobic001G076900 Sobic005G056400--Sobic001G491000 Sobic005G056400--Sobic001G329400 Sobic006G057866 Sobic006G057866 Sobic005G056400--Sobic006G057866 Sobic001G076900--Sobic005G056400 Sobic001G076900--Sobic003G370000 Sobic010G095000 Sobic010G095000 Sobic001G076900--Sobic010G095000 Sobic001G076900--Sobic001G020100 Sobic001G076900--Sobic004G305800 Sobic003G234400 Sobic003G234400 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic001G076900--Sobic002G370600 Sobic001G076900--Sobic004G283100 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic006G238200--Sobic001G100000 Sobic006G238200--Sobic009G237100 Sobic003G398800 Sobic003G398800 Sobic006G238200--Sobic003G398800 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic007G225500 Sobic007G225500 Sobic006G238200--Sobic007G225500 Sobic001G100000--Sobic001G491000 Sobic001G100000--Sobic006G238200 Sobic001G100000--Sobic009G237100 Sobic001G100000--Sobic002G275300 Sobic001G100000--Sobic006G207800 Sobic010G201700 Sobic010G201700 Sobic001G100000--Sobic010G201700 Sobic001G100000--Sobic010G181300 Sobic001G100000--Sobic001G289500 Sobic004G272100 Sobic004G272100 Sobic001G100000--Sobic004G272100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.