Gene annotation
Transcriptome id Sobic.004G268000.2,Sobic.004G268000.1
Synonym PPa4, Sb04g030590, AtPPa4
Functional annotation - (PubMedID : 26976818)
soluble inorganic pyrophosphatase, putative, expressed
UniProt A0A194YRR2 , A0A194YRV7
Pfam PF00719
Panther DB PTHR10286 PTHR10286:SF13
NCBI CDD KOG1626; Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38
KEGG Orthology K01507; inorganic pyrophosphatase
Gene Ontology GO:0006796; phosphate-containing compound metabolic process GO:0005737cytoplasm GO:0004427inorganic diphosphatase activity GO:0000287magnesium ion binding


Orthologs (automatic annotation)
TAIR AT3G53620 : pyrophosphorylase 4
RAP-DB (Rice) LOC_Os02g47600.1,LOC_Os02g47600.2 : soluble inorganic pyrophosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a021716 , Zm00025a032436
Brachypodium KQK00935 , KQK00934
Barley HORVU6Hr1G068760.11 , HORVU6Hr1G068760.10 , HORVU6Hr1G068760.9 , HORVU6Hr1G068760.8 , HORVU6Hr1G068760.7 , HORVU6Hr1G068760.6 , HORVU6Hr1G068760.5 , HORVU6Hr1G068760.4 , HORVU6Hr1G068760.3 , HORVU6Hr1G068760.2 , HORVU6Hr1G068760.1
Wheat TraesCS6A02G272300 , TraesCS6D02G252400 , TraesCS6B02G299800
Populus -


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cDNA sequences
Sobic.004G268000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G305800 expressed protein -
2 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
3 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
4 Sobic.002G275300 deoxyribodipyrimidine photolyase family protein, expressed -
5 Sobic.010G201700 GA16396-PA, putative, expressed -
6 Sobic.001G020100 expressed protein -
7 Sobic.006G238200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.002G370600 - -
9 Sobic.010G181300 SOUL heme-binding protein, putative, expressed -
10 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -
11 Sobic.004G283100 -(PubMedID : 26465154)@expressed protein -
12 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
13 Sobic.004G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed K00703: starch synthase
14 Sobic.003G398800 expressed protein -
15 Sobic.003G127800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.005G056400 Fructose-bisphosphate aldolase(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Fructose-bisphosphate aldolase, putative (Os)"(PubMedID : 27208977)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
17 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
18 Sobic.001G289500 kinase, pfkB family, putative, expressed -
19 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
20 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase


Gene co-expression network
sample Sobic004G268000 Sobic004G268000 Sobic004G305800 Sobic004G305800 Sobic004G268000--Sobic004G305800 Sobic009G129300 Sobic009G129300 Sobic004G268000--Sobic009G129300 Sobic001G491000 Sobic001G491000 Sobic004G268000--Sobic001G491000 Sobic002G275300 Sobic002G275300 Sobic004G268000--Sobic002G275300 Sobic010G201700 Sobic010G201700 Sobic004G268000--Sobic010G201700 Sobic001G020100 Sobic001G020100 Sobic004G268000--Sobic001G020100 Sobic006G238200 Sobic006G238200 Sobic004G268000--Sobic006G238200 Sobic002G370600 Sobic002G370600 Sobic004G268000--Sobic002G370600 Sobic010G181300 Sobic010G181300 Sobic004G268000--Sobic010G181300 Sobic004G305800--Sobic002G370600 Sobic004G305800--Sobic001G491000 Sobic005G056400 Sobic005G056400 Sobic004G305800--Sobic005G056400 Sobic004G305800--Sobic009G129300 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic007G161500 Sobic007G161500 Sobic004G305800--Sobic007G161500 Sobic003G431900 Sobic003G431900 Sobic004G305800--Sobic003G431900 Sobic004G305800--Sobic006G238200 Sobic009G129300--Sobic001G491000 Sobic009G129300--Sobic010G181300 Sobic003G398800 Sobic003G398800 Sobic009G129300--Sobic003G398800 Sobic003G127800 Sobic003G127800 Sobic009G129300--Sobic003G127800 Sobic009G129300--Sobic004G305800 Sobic009G129300--Sobic006G238200 Sobic009G129300--Sobic002G275300 Sobic009G129300--Sobic004G268000 Sobic009G129300--Sobic007G161500 Sobic001G491000--Sobic006G238200 Sobic001G491000--Sobic010G181300 Sobic001G100000 Sobic001G100000 Sobic001G491000--Sobic001G100000 Sobic001G491000--Sobic002G275300 Sobic001G289500 Sobic001G289500 Sobic001G491000--Sobic001G289500 Sobic001G491000--Sobic009G129300 Sobic001G491000--Sobic002G370600 Sobic009G237100 Sobic009G237100 Sobic001G491000--Sobic009G237100 Sobic001G491000--Sobic004G305800 Sobic002G275300--Sobic006G238200 Sobic002G275300--Sobic010G181300 Sobic002G275300--Sobic001G491000 Sobic002G298800 Sobic002G298800 Sobic002G275300--Sobic002G298800 Sobic007G108900 Sobic007G108900 Sobic002G275300--Sobic007G108900 Sobic007G225500 Sobic007G225500 Sobic002G275300--Sobic007G225500 Sobic007G103400 Sobic007G103400 Sobic002G275300--Sobic007G103400 Sobic010G035400 Sobic010G035400 Sobic002G275300--Sobic010G035400 Sobic003G306200 Sobic003G306200 Sobic002G275300--Sobic003G306200 Sobic009G043000 Sobic009G043000 Sobic010G201700--Sobic009G043000 Sobic004G272100 Sobic004G272100 Sobic010G201700--Sobic004G272100 Sobic003G002300 Sobic003G002300 Sobic010G201700--Sobic003G002300 Sobic001G102800 Sobic001G102800 Sobic010G201700--Sobic001G102800 Sobic001G519800 Sobic001G519800 Sobic010G201700--Sobic001G519800 Sobic010G201700--Sobic007G225500 Sobic008G102000 Sobic008G102000 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic004G308700 Sobic004G308700 Sobic010G201700--Sobic004G308700 Sobic001G020100--Sobic001G491000 Sobic003G370000 Sobic003G370000 Sobic001G020100--Sobic003G370000 Sobic001G020100--Sobic001G289500 Sobic001G020100--Sobic007G161500 Sobic006G130300 Sobic006G130300 Sobic001G020100--Sobic006G130300 Sobic001G020100--Sobic005G056400 Sobic001G076900 Sobic001G076900 Sobic001G020100--Sobic001G076900 Sobic001G020100--Sobic006G238200 Sobic001G020100--Sobic001G100000 Sobic006G238200--Sobic001G491000 Sobic006G238200--Sobic002G275300 Sobic006G238200--Sobic010G181300 Sobic006G238200--Sobic001G100000 Sobic006G238200--Sobic009G237100 Sobic006G238200--Sobic003G398800 Sobic006G238200--Sobic001G289500 Sobic006G238200--Sobic002G370600 Sobic006G238200--Sobic007G225500 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic002G370600--Sobic001G289500 Sobic002G370600--Sobic003G370000 Sobic002G370600--Sobic009G043000 Sobic010G181300--Sobic001G491000 Sobic010G181300--Sobic002G275300 Sobic010G181300--Sobic006G238200 Sobic010G181300--Sobic007G108900 Sobic010G181300--Sobic009G129300 Sobic010G181300--Sobic001G289500 Sobic006G102000 Sobic006G102000 Sobic010G181300--Sobic006G102000 Sobic010G181300--Sobic002G370600 Sobic010G181300--Sobic003G398800
Octagon: transcription factors


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