Gene annotation
Transcriptome id Sobic.004G283100.1
Synonym Sb04g031940
Functional annotation - (PubMedID : 26465154)
expressed protein
UniProt A0A1Z5RPF8
Pfam -
Panther DB PTHR35320 PTHR35320:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62140 : -
RAP-DB (Rice) LOC_Os02g45460.1 : expressed protein
MaizeGDB (Corn) Zm00025a032314
Brachypodium KQK00760
Barley HORVU0Hr1G016560.1 , HORVU6Hr1G065590.1
Wheat TraesCS6D02G238300 , TraesCS6B02G268000 , TraesCS6A02G257000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G272100 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
2 Sobic.008G053200 fructose-bisphosphate aldolase 2(PubMedID : 26465154)@fructose-bisphosphate aldolase 2("PubMedID : 26759170,PubMedID : 24597475")@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
3 Sobic.004G305800 expressed protein -
4 Sobic.004G238600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed K00703: starch synthase
5 Sobic.010G201700 GA16396-PA, putative, expressed -
6 Sobic.001G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
7 Sobic.002G370600 - -
8 Sobic.009G043000 thioredoxin, putative, expressed -
9 Sobic.009G129300 heat shock protein DnaJ, putative, expressed -
10 Sobic.003G024300 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
11 Sobic.004G308700 photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08911: light-harvesting complex I chlorophyll a/b binding protein 5
12 Sobic.007G034300 expressed protein -
13 Sobic.001G519800 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
14 Sobic.003G370000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chlorophyll A-B binding protein, putative, expressed K03542: photosystem II 22kDa protein
15 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
16 Sobic.005G165500 OsSub17 - Putative Subtilisin homologue, expressed -
17 Sobic.003G431700 ferredoxin--NADP reductase, chloroplast precursor, putative, expressed K02641: ferredoxin--NADP+ reductase
18 Sobic.007G161500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PGR5, putative, expressed -
19 Sobic.006G188000 expressed protein -
20 Sobic.006G207800 Plastid-lipid associated protein PAP / fibrillin family protein(PubMedID : 26465154)@PAP fibrillin family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G283100 Sobic004G283100 Sobic004G272100 Sobic004G272100 Sobic004G283100--Sobic004G272100 Sobic008G053200 Sobic008G053200 Sobic004G283100--Sobic008G053200 Sobic004G305800 Sobic004G305800 Sobic004G283100--Sobic004G305800 Sobic004G238600 Sobic004G238600 Sobic004G283100--Sobic004G238600 Sobic010G201700 Sobic010G201700 Sobic004G283100--Sobic010G201700 Sobic001G329400 Sobic001G329400 Sobic004G283100--Sobic001G329400 Sobic002G370600 Sobic002G370600 Sobic004G283100--Sobic002G370600 Sobic009G043000 Sobic009G043000 Sobic004G283100--Sobic009G043000 Sobic009G129300 Sobic009G129300 Sobic004G283100--Sobic009G129300 Sobic004G308700 Sobic004G308700 Sobic004G272100--Sobic004G308700 Sobic004G272100--Sobic010G201700 Sobic001G519800 Sobic001G519800 Sobic004G272100--Sobic001G519800 Sobic002G051100 Sobic002G051100 Sobic004G272100--Sobic002G051100 Sobic003G002300 Sobic003G002300 Sobic004G272100--Sobic003G002300 Sobic008G102000 Sobic008G102000 Sobic004G272100--Sobic008G102000 Sobic004G272100--Sobic009G043000 Sobic001G102800 Sobic001G102800 Sobic004G272100--Sobic001G102800 Sobic008G066100 Sobic008G066100 Sobic004G272100--Sobic008G066100 Sobic003G431900 Sobic003G431900 Sobic008G053200--Sobic003G431900 Sobic008G053200--Sobic001G519800 Sobic003G234200 Sobic003G234200 Sobic008G053200--Sobic003G234200 Sobic002G036000 Sobic002G036000 Sobic008G053200--Sobic002G036000 Sobic008G053200--Sobic004G238600 Sobic008G053200--Sobic004G283100 Sobic008G053200--Sobic004G272100 Sobic008G053200--Sobic004G308700 Sobic005G089600 Sobic005G089600 Sobic008G053200--Sobic005G089600 Sobic004G305800--Sobic002G370600 Sobic001G491000 Sobic001G491000 Sobic004G305800--Sobic001G491000 Sobic005G056400 Sobic005G056400 Sobic004G305800--Sobic005G056400 Sobic004G305800--Sobic009G129300 Sobic004G268000 Sobic004G268000 Sobic004G305800--Sobic004G268000 Sobic004G305800--Sobic010G201700 Sobic007G161500 Sobic007G161500 Sobic004G305800--Sobic007G161500 Sobic004G305800--Sobic003G431900 Sobic006G238200 Sobic006G238200 Sobic004G305800--Sobic006G238200 Sobic004G238600--Sobic008G053200 Sobic004G238600--Sobic004G283100 Sobic004G238600--Sobic004G305800 Sobic003G370000 Sobic003G370000 Sobic004G238600--Sobic003G370000 Sobic004G238600--Sobic002G370600 Sobic004G238600--Sobic007G161500 Sobic004G238600--Sobic001G329400 Sobic004G238600--Sobic004G272100 Sobic004G238600--Sobic001G519800 Sobic010G201700--Sobic009G043000 Sobic010G201700--Sobic004G272100 Sobic010G201700--Sobic003G002300 Sobic010G201700--Sobic001G102800 Sobic010G201700--Sobic001G519800 Sobic007G225500 Sobic007G225500 Sobic010G201700--Sobic007G225500 Sobic010G201700--Sobic008G102000 Sobic006G207800 Sobic006G207800 Sobic010G201700--Sobic006G207800 Sobic010G201700--Sobic004G308700 Sobic003G024300 Sobic003G024300 Sobic001G329400--Sobic003G024300 Sobic001G329400--Sobic007G161500 Sobic006G244000 Sobic006G244000 Sobic001G329400--Sobic006G244000 Sobic003G127800 Sobic003G127800 Sobic001G329400--Sobic003G127800 Sobic001G329400--Sobic009G129300 Sobic007G140800 Sobic007G140800 Sobic001G329400--Sobic007G140800 Sobic001G329400--Sobic004G283100 Sobic001G329400--Sobic001G491000 Sobic009G104800 Sobic009G104800 Sobic001G329400--Sobic009G104800 Sobic002G370600--Sobic004G305800 Sobic002G370600--Sobic001G491000 Sobic010G181300 Sobic010G181300 Sobic002G370600--Sobic010G181300 Sobic002G370600--Sobic006G238200 Sobic010G245200 Sobic010G245200 Sobic002G370600--Sobic010G245200 Sobic003G431700 Sobic003G431700 Sobic002G370600--Sobic003G431700 Sobic001G289500 Sobic001G289500 Sobic002G370600--Sobic001G289500 Sobic002G370600--Sobic003G370000 Sobic002G370600--Sobic009G043000 Sobic009G043000--Sobic010G201700 Sobic009G043000--Sobic003G002300 Sobic009G043000--Sobic008G102000 Sobic009G043000--Sobic001G102800 Sobic009G043000--Sobic007G225500 Sobic009G043000--Sobic004G272100 Sobic009G043000--Sobic006G207800 Sobic009G140600 Sobic009G140600 Sobic009G043000--Sobic009G140600 Sobic009G043000--Sobic001G519800 Sobic009G129300--Sobic001G491000 Sobic009G129300--Sobic010G181300 Sobic003G398800 Sobic003G398800 Sobic009G129300--Sobic003G398800 Sobic009G129300--Sobic003G127800 Sobic009G129300--Sobic004G305800 Sobic009G129300--Sobic006G238200 Sobic002G275300 Sobic002G275300 Sobic009G129300--Sobic002G275300 Sobic009G129300--Sobic004G268000 Sobic009G129300--Sobic007G161500
Octagon: transcription factors


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