Gene annotation
| Transcriptome id | Sobic.008G053200.1 |
|---|---|
| Synonym | FBA2, Sb08g004500 |
| Functional annotation | fructose-bisphosphate aldolase 2 (PubMedID : 26465154) fructose-bisphosphate aldolase 2( (PubMedID : 26759170,(PubMedID : 24597475) fructose-bisphospate aldolase isozyme, putative, expressed |
| UniProt | C5YSP7 |
| Pfam | PF00274 |
| Panther DB | PTHR11627 PTHR11627:SF15 |
| NCBI CDD | - |
| KEGG Orthology | K01623; fructose-bisphosphate aldolase, class I |
| Gene Ontology | GO:0006096; glycolytic process GO:0004332fructose-bisphosphate aldolase activity |
Orthologs (automatic annotation)
| TAIR | AT4G38970 : fructose-bisphosphate aldolase 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g07020.1 : fructose-bisphospate aldolase isozyme, putative, expressed |
| MaizeGDB (Corn) | Zm00025a054042 , Zm00025a033980 |
| Brachypodium | KQK02428 , KQJ89239 |
| Barley | HORVU3Hr1G002780.2 , HORVU3Hr1G002780.3 , HORVU3Hr1G002780.4 , HORVU3Hr1G002780.5 , HORVU3Hr1G002780.6 , HORVU3Hr1G002780.7 , HORVU3Hr1G002780.8 , HORVU3Hr1G002780.9 , HORVU5Hr1G032980.6 , HORVU5Hr1G032980.4 , HORVU5Hr1G032980.3 , HORVU5Hr1G032980.2 , HORVU5Hr1G032980.1 , HORVU4Hr1G019570.1 , HORVU4Hr1G019570.2 , HORVU4Hr1G019570.3 , HORVU4Hr1G019570.4 , HORVU4Hr1G019570.5 , HORVU4Hr1G019570.6 |
| Wheat | TraesCS4B02G109900 , TraesCS4A02G206400 , TraesCS5D02G122700 , TraesCS5A02G108000 , TraesCS3A02G020300 , TraesCS5B02G115300 , TraesCS4D02G107400 |
| Populus | - |
JBrowse
| Sobic.008G053200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G431900 | -(PubMedID : 26976818)@expressed protein | K07562: nonsense-mediated mRNA decay protein 3 |
| 2 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 3 | Sobic.003G234200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 4 | Sobic.002G036000 | -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed | K11517: (S)-2-hydroxy-acid oxidase |
| 5 | Sobic.004G238600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@starch synthase, putative, expressed | K00703: starch synthase |
| 6 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 7 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 8 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 9 | Sobic.005G089600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed | K00696: sucrose-phosphate synthase |
| 10 | Sobic.004G305800 | expressed protein | - |
| 11 | Sobic.005G165500 | OsSub17 - Putative Subtilisin homologue, expressed | - |
| 12 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 13 | Sobic.003G431700 | ferredoxin--NADP reductase, chloroplast precursor, putative, expressed | K02641: ferredoxin--NADP+ reductase |
| 14 | Sobic.002G370600 | - | - |
| 15 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 16 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 17 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 18 | Sobic.010G201700 | GA16396-PA, putative, expressed | - |
| 19 | Sobic.007G034300 | expressed protein | - |
| 20 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
Gene co-expression network
Octagon: transcription factors
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