Gene annotation
| Transcriptome id | Sobic.004G035500.1 |
|---|---|
| Synonym | DIT2.1, DCT, Sb04g003080, DCT, DIT2.1 ;2-oxoglutarate/malate translocator, SbDiT1;DIT2 |
| Functional annotation | - (PubMedID : 26976818) Involved in photorespiratory pathway (PubMedID : 12887583) dicarboxylate transporter 3 (PubMedID : 27016024) citrate transporter, putative, expressed |
| UniProt | Q8L801 |
| Pfam | PF03600 |
| Panther DB | PTHR10283 PTHR10283:SF106 |
| NCBI CDD | - |
| KEGG Orthology | K03319; divalent anion:Na+ symporter, DASS family |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT5G64290 : dicarboxylate transport 2.1 |
|---|---|
| RAP-DB (Rice) | LOC_Os09g29430.1 : citrate transporter, putative, expressed |
| MaizeGDB (Corn) | Zm00025a004917 , Zm00025a014127 |
| Brachypodium | KQJ90598 , KQJ98711 |
| Barley | HORVU5Hr1G070230.2 , HORVU5Hr1G070230.1 , HORVU7Hr1G063220.2 , HORVU7Hr1G063220.3 , HORVU7Hr1G063220.1 |
| Wheat | TraesCS7D02G283000 , TraesCS7A02G285000 , TraesCS5B02G246600 , TraesCS5A02G248900 , TraesCS5D02G256100 , TraesCS7B02G199700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 2 | Sobic.008G134800 | shikimate kinase, putative, expressed | - |
| 3 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 4 | Sobic.004G249800 | expressed protein | - |
| 5 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 6 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 7 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 8 | Sobic.004G272100 | phosphoribulokinase/Uridine kinase family protein, expressed | K00855: PRK, phosphoribulokinase |
| 9 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 10 | Sobic.001G519800 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 11 | Sobic.001G425400 | high cyclic electron flow 1(PubMedID : 26465154)@"D-fructose-1,6-bisphosphate 1-phosphohydrolase (Os)"(PubMedID : 27208977)@fructose-1,6-bisphosphatase, putative, expressed | K03841: FBP, fructose-1,6-bisphosphatase I |
| 12 | Sobic.007G004800 | Ferredoxin-1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed | K02639: ferredoxin |
| 13 | Sobic.003G199800 | expressed protein | - |
| 14 | Sobic.010G109500 | expressed protein | - |
| 15 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 16 | Sobic.004G308700 | photosystem I light harvesting complex gene 5(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08911: light-harvesting complex I chlorophyll a/b binding protein 5 |
| 17 | Sobic.003G052500 | Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed | K02699: photosystem I subunit XI |
| 18 | Sobic.009G191300 | photosystem II reaction center W protein, chloroplast precursor, putative, expressed | K02721: photosystem II PsbW protein |
| 19 | Sobic.002G051100 | Probable ribose-5-phosphate isomerase(PubMedID : 26186930)@ribose-5-phosphate isomerase A, putative, expressed | K01807: ribose 5-phosphate isomerase A |
| 20 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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